Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DLZ entry

There are 9 chains in PDB entry 9DLZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	VAL 413
B	MET 1	GLY 390
C	MET 1	MET 370
D	MET 1	GLU 285
E	PRO 2	PRO 176
F	THR 2	PHE 168
G	SER 7	VAL 151
H	GLU 498	ASP 501
I	SER 461	ASP 501

There are 71 helices in PDB entry 9DLZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	66	Right-handed 310
Helix 2	AA2	A	85	99	Right-handed alpha
Helix 3	AA3	A	119	134	Right-handed alpha
Helix 4	AA4	A	144	151	Right-handed alpha
Helix 5	AA5	A	152	154	Right-handed 310
Helix 6	AA6	A	196	212	Right-handed alpha
Helix 7	AA7	A	216	218	Right-handed 310
Helix 8	AA8	A	219	232	Right-handed alpha
Helix 9	AA9	A	237	248	Right-handed alpha
Helix 10	AB1	A	248	253	Right-handed alpha
Helix 11	AB2	A	273	278	Right-handed alpha
Helix 12	AB3	A	279	283	Right-handed 310
Helix 13	AB4	A	284	288	Right-handed 310
Helix 14	AB5	A	295	306	Right-handed alpha
Helix 15	AB6	A	307	310	Right-handed 310
Helix 16	AB7	A	311	318	Right-handed alpha
Helix 17	AB8	A	323	327	Right-handed 310
Helix 18	AB9	A	330	354	Right-handed alpha
Helix 19	AC1	A	375	385	Right-handed alpha
Helix 20	AC2	A	387	393	Right-handed 310
Helix 21	AC3	A	397	403	Right-handed alpha
Helix 22	AC4	B	82	94	Right-handed alpha
Helix 23	AC5	B	116	130	Right-handed alpha
Helix 24	AC6	B	141	150	Right-handed alpha
Helix 25	AC7	B	185	201	Right-handed alpha
Helix 26	AC8	B	209	221	Right-handed alpha
Helix 27	AC9	B	226	237	Right-handed alpha
Helix 28	AD1	B	256	261	Right-handed alpha
Helix 29	AD2	B	262	266	Right-handed 310
Helix 30	AD3	B	267	271	Right-handed 310
Helix 31	AD4	B	277	288	Right-handed alpha
Helix 32	AD5	B	293	300	Right-handed alpha
Helix 33	AD6	B	312	328	Right-handed alpha
Helix 34	AD7	B	334	338	Right-handed 310
Helix 35	AD8	B	352	366	Right-handed alpha
Helix 36	AD9	B	368	372	Right-handed 310
Helix 37	AE1	B	374	382	Right-handed alpha
Helix 38	AE2	B	384	390	Right-handed alpha
Helix 39	AE3	C	357	364	Right-handed alpha
Helix 40	AE4	D	8	25	Right-handed alpha
Helix 41	AE5	D	38	40	Right-handed 310
Helix 42	AE6	D	47	51	Right-handed 310
Helix 43	AE7	D	63	70	Right-handed alpha
Helix 44	AE8	D	71	81	Right-handed alpha
Helix 45	AE9	D	107	114	Right-handed alpha
Helix 46	AF1	D	115	135	Right-handed alpha
Helix 47	AF2	D	171	187	Right-handed alpha
Helix 48	AF3	D	188	191	Right-handed 310
Helix 49	AF4	D	228	233	Right-handed alpha
Helix 50	AF5	D	233	279	Right-handed alpha
Helix 51	AF6	E	40	53	Right-handed alpha
Helix 52	AF7	E	63	83	Right-handed alpha
Helix 53	AF8	E	87	100	Right-handed alpha
Helix 54	AF9	E	122	149	Right-handed alpha
Helix 55	AG1	E	157	162	Right-handed alpha
Helix 56	AG2	E	167	171	Right-handed 310
Helix 57	AG3	F	4	20	Right-handed alpha
Helix 58	AG4	F	36	41	Right-handed alpha
Helix 59	AG5	F	80	97	Right-handed alpha
Helix 60	AG6	F	97	102	Right-handed alpha
Helix 61	AG7	F	120	126	Right-handed alpha
Helix 62	AG8	F	127	167	Right-handed alpha
Helix 63	AG9	G	8	13	Right-handed 310
Helix 64	AH1	G	39	48	Right-handed alpha
Helix 65	AH2	G	51	59	Right-handed alpha
Helix 66	AH3	G	68	85	Right-handed alpha
Helix 67	AH4	G	90	97	Right-handed alpha
Helix 68	AH5	G	99	114	Right-handed alpha
Helix 69	AH6	G	119	132	Right-handed alpha
Helix 70	AH7	G	137	146	Right-handed alpha
Helix 71	AH8	I	462	482	Right-handed alpha

There are 23 sheets in PDB entry 9DLZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	110	114	parallel
Strand 5	A	138	143	parallel
Strand 6	A	395	396	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	72	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	82	83	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	191	193	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	165	169	anti-parallel
Strand 4	A	319	322	parallel
Strand 5	A	367	368	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	266	271	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	17	22	anti-parallel
Strand 3	B	8	13	anti-parallel
Strand 4	B	106	111	parallel
Strand 5	B	135	140	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	36	37	anti-parallel
Strand 3	B	71	71	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	78	79	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	180	182	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	154	159	anti-parallel
Strand 4	B	301	304	parallel
Strand 5	B	344	345	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	251	252	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	25	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	41	48	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	85	91	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	110	114	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	131	137	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	193	199	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	218	222	anti-parallel
Strand 3	C	227	232	anti-parallel
Strand 4	C	238	243	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	254	first strand
Strand 2	C	259	264	anti-parallel
Strand 3	C	270	274	anti-parallel
Strand 4	C	280	285	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	332	first strand
Strand 2	C	342	347	anti-parallel
Strand 3	C	353	356	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	36	first strand
Strand 2	D	42	46	anti-parallel
Strand 3	D	54	60	anti-parallel
Strand 4	D	93	98	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	151	156	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	220	227	anti-parallel
Strand 5	D	197	202	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	19	20	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	60	65	anti-parallel
Strand 3	F	69	74	anti-parallel
Strand 4	F	114	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DLZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLZ