Analysis of interatomic Contacts of Structural Units in PDB entry:
9DM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DM7 entry

There are 3 chains in PDB entry 9DM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 21GLY 405
H
 GLU 1VAL 128
L
 ASP 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9DM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 29Right-handed alpha
Helix 2
AA2
A
31 47Right-handed alpha
Helix 3
AA3
A
56 64Right-handed alpha
Helix 4
AA4
A
93 101Right-handed alpha
Helix 5
AA5
A
102 104Right-handed 310
Helix 6
AA6
A
107 135Right-handed alpha
Helix 7
AA7
A
138 150Right-handed alpha
Helix 8
AA8
A
152 162Right-handed alpha
Helix 9
AA9
A
164 178Right-handed alpha
Helix 10
AB1
A
180 195Right-handed alpha
Helix 11
AB2
A
200 208Right-handed alpha
Helix 12
AB3
A
212 232Right-handed alpha
Helix 13
AB4
A
234 245Right-handed alpha
Helix 14
AB5
A
260 270Right-handed alpha
Helix 15
AB6
A
278 297Right-handed alpha
Helix 16
AB7
A
299 315Right-handed alpha
Helix 17
AB8
A
319 324Right-handed 310
Helix 18
AB9
A
325 336Right-handed alpha
Helix 19
AC1
A
337 341Right-handed 310
Helix 20
AC2
A
343 358Right-handed alpha
Helix 21
AC3
A
358 364Right-handed alpha
Helix 22
AC4
A
376 381Right-handed alpha
Helix 23
AC5
A
384 404Right-handed alpha
Helix 24
AC6
H
28 32Right-handed 310
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There are 5 sheets in PDB entry 9DM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
69 71anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 58first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
93 99anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
101 105first strand
Strand 2
H
109 113anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
23 25anti-parallel
Strand 3
L
70 71anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
53 54first strand
Strand 2
L
45 49anti-parallel
Strand 3
L
33 38anti-parallel
Strand 4
L
85 90anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il