Analysis of interatomic Contacts of Structural Units in PDB entry:
9DMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DMK entry

There are 7 chains in PDB entry 9DMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLY 437
C	SER 1	GLN 436
E	SER 1	ARG 480
D	LEU 1	ILE 496
B	LYS 1	PRO 473
F	GLN 32	PRO 253
G	ASP 20	ARG 235

There are 62 helices in PDB entry 9DMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	A	68	73	Right-handed 310
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	211	218	Right-handed alpha
Helix 5	AA5	A	218	231	Right-handed alpha
Helix 6	AA6	A	232	235	Right-handed 310
Helix 7	AA7	A	236	240	Right-handed 310
Helix 8	AA8	A	241	264	Right-handed alpha
Helix 9	AA9	A	272	300	Right-handed alpha
Helix 10	AB1	A	309	317	Right-handed alpha
Helix 11	AB2	A	319	324	Right-handed alpha
Helix 12	AB3	A	369	436	Right-handed alpha
Helix 13	AB4	C	2	12	Right-handed alpha
Helix 14	AB5	C	68	73	Right-handed 310
Helix 15	AB6	C	83	85	Right-handed 310
Helix 16	AB7	C	211	218	Right-handed alpha
Helix 17	AB8	C	218	231	Right-handed alpha
Helix 18	AB9	C	232	235	Right-handed 310
Helix 19	AC1	C	241	264	Right-handed alpha
Helix 20	AC2	C	272	300	Right-handed alpha
Helix 21	AC3	C	309	317	Right-handed alpha
Helix 22	AC4	C	320	324	Right-handed 310
Helix 23	AC5	C	369	436	Right-handed alpha
Helix 24	AC6	E	2	12	Right-handed alpha
Helix 25	AC7	E	68	72	Right-handed 310
Helix 26	AC8	E	83	85	Right-handed 310
Helix 27	AC9	E	222	229	Right-handed alpha
Helix 28	AD1	E	229	243	Right-handed alpha
Helix 29	AD2	E	244	246	Right-handed 310
Helix 30	AD3	E	247	251	Right-handed 310
Helix 31	AD4	E	252	272	Right-handed alpha
Helix 32	AD5	E	283	311	Right-handed alpha
Helix 33	AD6	E	320	329	Right-handed alpha
Helix 34	AD7	E	330	335	Right-handed alpha
Helix 35	AD8	E	408	469	Right-handed alpha
Helix 36	AD9	D	2	13	Right-handed alpha
Helix 37	AE1	D	83	87	Right-handed 310
Helix 38	AE2	D	225	232	Right-handed alpha
Helix 39	AE3	D	232	242	Right-handed alpha
Helix 40	AE4	D	243	248	Right-handed 310
Helix 41	AE5	D	255	276	Right-handed alpha
Helix 42	AE6	D	286	314	Right-handed alpha
Helix 43	AE7	D	323	332	Right-handed alpha
Helix 44	AE8	D	332	338	Right-handed alpha
Helix 45	AE9	D	409	473	Right-handed alpha
Helix 46	AF1	B	2	13	Right-handed alpha
Helix 47	AF2	B	63	66	Right-handed 310
Helix 48	AF3	B	81	85	Right-handed 310
Helix 49	AF4	B	220	227	Right-handed alpha
Helix 50	AF5	B	227	238	Right-handed alpha
Helix 51	AF6	B	239	244	Right-handed 310
Helix 52	AF7	B	251	272	Right-handed alpha
Helix 53	AF8	B	282	310	Right-handed alpha
Helix 54	AF9	B	319	327	Right-handed alpha
Helix 55	AG1	B	328	334	Right-handed alpha
Helix 56	AG2	B	398	459	Right-handed alpha
Helix 57	AG3	F	93	96	Right-handed 310
Helix 58	AG4	F	118	122	Right-handed 310
Helix 59	AG5	F	196	198	Right-handed 310
Helix 60	AG6	F	227	230	Right-handed 310
Helix 61	AG7	G	147	151	Right-handed 310
Helix 62	AG8	G	207	213	Right-handed alpha

There are 30 sheets in PDB entry 9DMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	107	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	121	127	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	107	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	29	44	anti-parallel
Strand 6	A	156	160	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	139	148	anti-parallel
Strand 3	A	198	209	anti-parallel
Strand 4	A	176	188	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	107	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	121	127	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	107	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	29	44	anti-parallel
Strand 6	C	156	160	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	198	209	anti-parallel
Strand 4	C	176	188	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	113	118	anti-parallel
Strand 4	E	49	66	anti-parallel
Strand 5	E	121	127	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	113	118	anti-parallel
Strand 4	E	49	66	anti-parallel
Strand 5	E	29	44	anti-parallel
Strand 6	E	156	160	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	211	220	anti-parallel
Strand 4	E	185	189	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	211	220	anti-parallel
Strand 4	E	192	195	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	82	first strand
Strand 2	D	110	113	anti-parallel
Strand 3	D	115	120	anti-parallel
Strand 4	D	51	68	anti-parallel
Strand 5	D	123	129	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	82	first strand
Strand 2	D	110	113	anti-parallel
Strand 3	D	115	120	anti-parallel
Strand 4	D	51	68	anti-parallel
Strand 5	D	31	46	anti-parallel
Strand 6	D	158	162	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	141	149	anti-parallel
Strand 3	D	213	223	anti-parallel
Strand 4	D	190	194	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	141	149	anti-parallel
Strand 3	D	213	223	anti-parallel
Strand 4	D	197	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	108	111	anti-parallel
Strand 3	B	115	118	anti-parallel
Strand 4	B	49	61	anti-parallel
Strand 5	B	121	127	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	108	111	anti-parallel
Strand 3	B	115	118	anti-parallel
Strand 4	B	49	61	anti-parallel
Strand 5	B	29	44	anti-parallel
Strand 6	B	156	160	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	139	148	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	185	189	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	139	148	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	192	197	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	37	first strand
Strand 2	F	49	56	anti-parallel
Strand 3	F	109	114	anti-parallel
Strand 4	F	99	104	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	43	first strand
Strand 2	F	147	151	parallel
Strand 3	F	123	129	anti-parallel
Strand 4	F	65	70	anti-parallel
Strand 5	F	76	82	anti-parallel
Strand 6	F	89	91	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	43	first strand
Strand 2	F	147	151	parallel
Strand 3	F	123	129	anti-parallel
Strand 4	F	142	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	164	first strand
Strand 2	F	175	185	anti-parallel
Strand 3	F	216	225	anti-parallel
Strand 4	F	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	164	first strand
Strand 2	F	175	185	anti-parallel
Strand 3	F	216	225	anti-parallel
Strand 4	F	209	210	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	190	194	first strand
Strand 2	F	235	240	anti-parallel
Strand 3	F	245	250	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	26	first strand
Strand 2	G	38	44	anti-parallel
Strand 3	G	94	99	anti-parallel
Strand 4	G	86	90	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	126	130	parallel
Strand 3	G	109	114	anti-parallel
Strand 4	G	57	62	anti-parallel
Strand 5	G	68	73	anti-parallel
Strand 6	G	77	78	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	126	130	parallel
Strand 3	G	109	114	anti-parallel
Strand 4	G	121	122	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	142	first strand
Strand 2	G	153	163	anti-parallel
Strand 3	G	197	206	anti-parallel
Strand 4	G	183	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	173	first strand
Strand 2	G	217	220	anti-parallel
Strand 3	G	229	231	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DMK