Analysis of interatomic Contacts of Structural Units in PDB entry:
9DMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DMQ entry

There are 7 chains in PDB entry 9DMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLY 437
C	SER 1	GLN 436
E	SER 1	ARG 480
D	LEU 1	ILE 496
B	LYS 1	PRO 473
F	GLU 32	PRO 264
G	ASP 20	ARG 232

There are 72 helices in PDB entry 9DMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	A	68	73	Right-handed 310
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	211	218	Right-handed alpha
Helix 5	AA5	A	218	230	Right-handed alpha
Helix 6	AA6	A	231	235	Right-handed 310
Helix 7	AA7	A	236	240	Right-handed 310
Helix 8	AA8	A	241	263	Right-handed alpha
Helix 9	AA9	A	272	300	Right-handed alpha
Helix 10	AB1	A	309	316	Right-handed alpha
Helix 11	AB2	A	319	324	Right-handed alpha
Helix 12	AB3	A	369	436	Right-handed alpha
Helix 13	AB4	C	2	12	Right-handed alpha
Helix 14	AB5	C	68	73	Right-handed 310
Helix 15	AB6	C	81	85	Right-handed 310
Helix 16	AB7	C	211	218	Right-handed alpha
Helix 17	AB8	C	218	231	Right-handed alpha
Helix 18	AB9	C	232	235	Right-handed 310
Helix 19	AC1	C	236	240	Right-handed 310
Helix 20	AC2	C	241	264	Right-handed alpha
Helix 21	AC3	C	272	300	Right-handed alpha
Helix 22	AC4	C	309	317	Right-handed alpha
Helix 23	AC5	C	318	323	Right-handed alpha
Helix 24	AC6	C	369	436	Right-handed alpha
Helix 25	AC7	E	2	12	Right-handed alpha
Helix 26	AC8	E	68	72	Right-handed 310
Helix 27	AC9	E	83	85	Right-handed 310
Helix 28	AD1	E	222	229	Right-handed alpha
Helix 29	AD2	E	229	243	Right-handed alpha
Helix 30	AD3	E	244	246	Right-handed 310
Helix 31	AD4	E	247	251	Right-handed 310
Helix 32	AD5	E	252	273	Right-handed alpha
Helix 33	AD6	E	283	311	Right-handed alpha
Helix 34	AD7	E	320	329	Right-handed alpha
Helix 35	AD8	E	329	335	Right-handed alpha
Helix 36	AD9	E	408	469	Right-handed alpha
Helix 37	AE1	D	2	13	Right-handed alpha
Helix 38	AE2	D	70	75	Right-handed 310
Helix 39	AE3	D	83	87	Right-handed 310
Helix 40	AE4	D	225	232	Right-handed alpha
Helix 41	AE5	D	232	242	Right-handed alpha
Helix 42	AE6	D	243	249	Right-handed 310
Helix 43	AE7	D	250	254	Right-handed 310
Helix 44	AE8	D	255	276	Right-handed alpha
Helix 45	AE9	D	286	314	Right-handed alpha
Helix 46	AF1	D	323	333	Right-handed alpha
Helix 47	AF2	D	333	339	Right-handed alpha
Helix 48	AF3	D	409	473	Right-handed alpha
Helix 49	AF4	B	2	13	Right-handed alpha
Helix 50	AF5	B	63	66	Right-handed 310
Helix 51	AF6	B	68	73	Right-handed 310
Helix 52	AF7	B	83	85	Right-handed 310
Helix 53	AF8	B	175	179	Right-handed 310
Helix 54	AF9	B	200	204	Right-handed 310
Helix 55	AG1	B	220	227	Right-handed alpha
Helix 56	AG2	B	227	237	Right-handed alpha
Helix 57	AG3	B	238	244	Right-handed 310
Helix 58	AG4	B	251	272	Right-handed alpha
Helix 59	AG5	B	282	310	Right-handed alpha
Helix 60	AG6	B	319	328	Right-handed alpha
Helix 61	AG7	B	328	334	Right-handed alpha
Helix 62	AG8	B	398	459	Right-handed alpha
Helix 63	AG9	F	59	61	Right-handed 310
Helix 64	AH1	F	117	121	Right-handed 310
Helix 65	AH2	F	137	141	Right-handed 310
Helix 66	AH3	F	207	209	Right-handed 310
Helix 67	AH4	F	238	241	Right-handed 310
Helix 68	AH5	F	252	255	Right-handed 310
Helix 69	AH6	G	48	51	Right-handed 310
Helix 70	AH7	G	99	103	Right-handed 310
Helix 71	AH8	G	142	148	Right-handed alpha
Helix 72	AH9	G	204	209	Right-handed alpha

There are 30 sheets in PDB entry 9DMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	108	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	121	127	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	108	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	29	44	anti-parallel
Strand 6	A	156	160	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	139	148	anti-parallel
Strand 3	A	198	209	anti-parallel
Strand 4	A	176	188	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	108	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	121	127	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	108	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	29	44	anti-parallel
Strand 6	C	156	160	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	198	209	anti-parallel
Strand 4	C	176	188	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	113	118	anti-parallel
Strand 4	E	49	66	anti-parallel
Strand 5	E	121	127	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	113	118	anti-parallel
Strand 4	E	49	66	anti-parallel
Strand 5	E	29	44	anti-parallel
Strand 6	E	156	160	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	211	220	anti-parallel
Strand 4	E	185	189	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	211	220	anti-parallel
Strand 4	E	192	195	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	82	first strand
Strand 2	D	110	113	anti-parallel
Strand 3	D	115	120	anti-parallel
Strand 4	D	51	68	anti-parallel
Strand 5	D	123	129	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	82	first strand
Strand 2	D	110	113	anti-parallel
Strand 3	D	115	120	anti-parallel
Strand 4	D	51	68	anti-parallel
Strand 5	D	31	46	anti-parallel
Strand 6	D	158	162	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	141	150	anti-parallel
Strand 3	D	213	223	anti-parallel
Strand 4	D	190	194	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	141	150	anti-parallel
Strand 3	D	213	223	anti-parallel
Strand 4	D	197	201	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	172	173	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	81	first strand
Strand 2	B	107	111	anti-parallel
Strand 3	B	115	118	anti-parallel
Strand 4	B	49	61	anti-parallel
Strand 5	B	121	127	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	81	first strand
Strand 2	B	107	111	anti-parallel
Strand 3	B	115	118	anti-parallel
Strand 4	B	49	61	anti-parallel
Strand 5	B	29	44	anti-parallel
Strand 6	B	156	160	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	139	148	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	185	189	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	139	148	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	192	197	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	38	first strand
Strand 2	F	49	56	anti-parallel
Strand 3	F	108	113	anti-parallel
Strand 4	F	98	103	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	158	162	parallel
Strand 3	F	122	135	anti-parallel
Strand 4	F	63	70	anti-parallel
Strand 5	F	76	82	anti-parallel
Strand 6	F	88	90	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	158	162	parallel
Strand 3	F	122	135	anti-parallel
Strand 4	F	142	145	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	175	first strand
Strand 2	F	186	196	anti-parallel
Strand 3	F	227	236	anti-parallel
Strand 4	F	214	216	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	175	first strand
Strand 2	F	186	196	anti-parallel
Strand 3	F	227	236	anti-parallel
Strand 4	F	220	221	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	205	first strand
Strand 2	F	246	251	anti-parallel
Strand 3	F	256	261	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	25	first strand
Strand 2	G	38	44	anti-parallel
Strand 3	G	90	95	anti-parallel
Strand 4	G	82	87	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	123	127	parallel
Strand 3	G	105	110	anti-parallel
Strand 4	G	53	58	anti-parallel
Strand 5	G	65	69	anti-parallel
Strand 6	G	73	74	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	123	127	parallel
Strand 3	G	105	110	anti-parallel
Strand 4	G	118	119	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	139	first strand
Strand 2	G	150	160	anti-parallel
Strand 3	G	194	203	anti-parallel
Strand 4	G	180	184	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	175	first strand
Strand 2	G	166	171	anti-parallel
Strand 3	G	212	218	anti-parallel
Strand 4	G	226	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DMQ