Analysis of interatomic Contacts of Structural Units in PDB entry:
9DMX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DMX entry

There are 2 chains in PDB entry 9DMX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 6	ASP 452
B	GLY 5	ASP 452

There are 16 helices in PDB entry 9DMX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	97	Right-handed 310
Helix 2	AA2	A	203	208	Right-handed alpha
Helix 3	AA3	A	235	239	Right-handed 310
Helix 4	AA4	A	249	255	Right-handed alpha
Helix 5	AA5	A	311	317	Right-handed alpha
Helix 6	AA6	A	331	333	Right-handed 310
Helix 7	AA7	A	340	344	Right-handed 310
Helix 8	AA8	A	423	429	Right-handed alpha
Helix 9	AA9	B	93	97	Right-handed 310
Helix 10	AB1	B	203	208	Right-handed alpha
Helix 11	AB2	B	235	239	Right-handed 310
Helix 12	AB3	B	249	255	Right-handed alpha
Helix 13	AB4	B	311	317	Right-handed alpha
Helix 14	AB5	B	331	333	Right-handed 310
Helix 15	AB6	B	340	344	Right-handed 310
Helix 16	AB7	B	423	429	Right-handed alpha

There are 20 sheets in PDB entry 9DMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	19	first strand
Strand 2	A	117	126	parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	38	44	anti-parallel
Strand 5	A	52	57	anti-parallel
Strand 6	A	65	66	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	79	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	24	29	anti-parallel
Strand 4	B	7	11	anti-parallel
Strand 5	B	117	126	parallel
Strand 6	B	16	19	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	79	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	24	29	anti-parallel
Strand 4	B	7	11	anti-parallel
Strand 5	B	117	126	parallel
Strand 6	B	99	105	anti-parallel
Strand 7	B	38	44	anti-parallel
Strand 8	B	52	57	anti-parallel
Strand 9	B	65	66	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	152	161	anti-parallel
Strand 3	A	194	202	anti-parallel
Strand 4	A	187	189	anti-parallel
Strand 5	B	187	188	anti-parallel
Strand 6	B	194	202	anti-parallel
Strand 7	B	152	161	anti-parallel
Strand 8	B	135	139	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	194	202	anti-parallel
Strand 3	A	187	189	anti-parallel
Strand 4	B	187	188	anti-parallel
Strand 5	B	194	202	anti-parallel
Strand 6	B	181	183	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	167	172	anti-parallel
Strand 3	A	211	218	anti-parallel
Strand 4	A	226	232	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	258	267	anti-parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	294	295	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	289	291	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	320	323	anti-parallel
Strand 4	A	335	336	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	354	first strand
Strand 2	A	370	380	anti-parallel
Strand 3	A	413	422	anti-parallel
Strand 4	A	400	402	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	354	first strand
Strand 2	A	370	380	anti-parallel
Strand 3	A	413	422	anti-parallel
Strand 4	A	406	407	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	391	first strand
Strand 2	A	432	438	anti-parallel
Strand 3	A	445	449	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	29	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	74	79	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	211	218	anti-parallel
Strand 4	B	226	232	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	246	first strand
Strand 2	B	258	267	anti-parallel
Strand 3	B	301	310	anti-parallel
Strand 4	B	294	295	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	273	279	anti-parallel
Strand 3	B	289	291	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	273	279	anti-parallel
Strand 3	B	320	323	anti-parallel
Strand 4	B	335	336	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	353	first strand
Strand 2	B	370	380	anti-parallel
Strand 3	B	413	422	anti-parallel
Strand 4	B	400	402	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	353	first strand
Strand 2	B	370	380	anti-parallel
Strand 3	B	413	422	anti-parallel
Strand 4	B	406	407	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	385	391	anti-parallel
Strand 3	B	432	438	anti-parallel
Strand 4	B	445	449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DMX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DMX