Analysis of interatomic Contacts of Structural Units in PDB entry:
9DMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DMY entry

There are 5 chains in PDB entry 9DMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 92TYR 229
B
 GLY 92TYR 229
C
 GLY 92TYR 229
D
 GLY 92TYR 229
E
 GLY 92TYR 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 9DMY

There are 15 sheets in PDB entry 9DMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 95first strand
Strand 2
B
94 95parallel
Strand 3
A
94 95parallel
Strand 4
C
94 95parallel
Strand 5
E
94 95parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 111first strand
Strand 2
B
109 111parallel
Strand 3
A
109 111parallel
Strand 4
C
109 111parallel
Strand 5
E
109 111parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 116first strand
Strand 2
B
114 116parallel
Strand 3
A
114 116parallel
Strand 4
C
114 116parallel
Strand 5
E
114 116parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 131first strand
Strand 2
B
130 131parallel
Strand 3
A
130 131parallel
Strand 4
C
130 131parallel
Strand 5
E
130 131parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 138first strand
Strand 2
B
134 138parallel
Strand 3
A
134 138parallel
Strand 4
C
134 138parallel
Strand 5
E
134 138parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
141 142first strand
Strand 2
B
141 142parallel
Strand 3
A
141 142parallel
Strand 4
C
141 142parallel
Strand 5
E
141 142parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 154first strand
Strand 2
B
147 154parallel
Strand 3
A
147 154parallel
Strand 4
C
147 154parallel
Strand 5
E
147 154parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
157 159first strand
Strand 2
B
157 159parallel
Strand 3
A
157 159parallel
Strand 4
C
157 159parallel
Strand 5
E
157 159parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 166first strand
Strand 2
B
164 166parallel
Strand 3
A
164 166parallel
Strand 4
C
164 166parallel
Strand 5
E
164 166parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
C
169 171parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 181first strand
Strand 2
B
177 181parallel
Strand 3
A
177 181parallel
Strand 4
C
177 181parallel
Strand 5
E
177 181parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
186 196first strand
Strand 2
B
186 196parallel
Strand 3
A
186 196parallel
Strand 4
C
186 196parallel
Strand 5
E
186 196parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
202 206first strand
Strand 2
B
202 206parallel
Strand 3
A
202 207parallel
Strand 4
C
202 207parallel
Strand 5
E
202 206parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
220 223first strand
Strand 2
B
220 223parallel
Strand 3
A
220 223parallel
Strand 4
C
220 223parallel
Strand 5
E
220 223parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
226 228first strand
Strand 2
B
226 228parallel
Strand 3
A
226 228parallel
Strand 4
C
226 228parallel
Strand 5
E
226 228parallel
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