Analysis of interatomic Contacts of Structural Units in PDB entry:
9DN1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DN1 entry

There are 11 chains in PDB entry 9DN1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 79	LEU 231
I	GLU 79	LEU 231
J	GLU 79	LEU 231
K	GLU 79	LEU 231
L	GLU 79	LEU 231
M	GLU 79	LEU 231
N	GLU 79	LEU 231
O	GLU 79	LEU 231
P	GLU 79	LEU 231
Q	GLU 79	LEU 231
R	GLU 79	LEU 231

There are 89 helices in PDB entry 9DN1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	79	89	Right-handed alpha
Helix 2	AA2	H	105	109	Right-handed 310
Helix 3	AA3	H	112	117	Right-handed alpha
Helix 4	AA4	H	124	153	Right-handed alpha
Helix 5	AA5	H	153	175	Right-handed alpha
Helix 6	AA6	H	175	189	Right-handed alpha
Helix 7	AA7	H	190	210	Right-handed alpha
Helix 8	AA8	H	211	214	Right-handed 310
Helix 9	AA9	I	80	89	Right-handed alpha
Helix 10	AB1	I	105	109	Right-handed 310
Helix 11	AB2	I	112	117	Right-handed alpha
Helix 12	AB3	I	124	153	Right-handed alpha
Helix 13	AB4	I	153	175	Right-handed alpha
Helix 14	AB5	I	175	189	Right-handed alpha
Helix 15	AB6	I	190	203	Right-handed alpha
Helix 16	AB7	I	203	209	Right-handed alpha
Helix 17	AB8	I	210	214	Right-handed 310
Helix 18	AB9	J	80	89	Right-handed alpha
Helix 19	AC1	J	105	109	Right-handed 310
Helix 20	AC2	J	112	117	Right-handed alpha
Helix 21	AC3	J	124	153	Right-handed alpha
Helix 22	AC4	J	153	175	Right-handed alpha
Helix 23	AC5	J	175	189	Right-handed alpha
Helix 24	AC6	J	190	210	Right-handed alpha
Helix 25	AC7	J	211	214	Right-handed 310
Helix 26	AC8	K	80	89	Right-handed alpha
Helix 27	AC9	K	105	109	Right-handed 310
Helix 28	AD1	K	112	117	Right-handed alpha
Helix 29	AD2	K	124	153	Right-handed alpha
Helix 30	AD3	K	153	175	Right-handed alpha
Helix 31	AD4	K	175	189	Right-handed alpha
Helix 32	AD5	K	190	209	Right-handed alpha
Helix 33	AD6	K	210	214	Right-handed 310
Helix 34	AD7	L	80	89	Right-handed alpha
Helix 35	AD8	L	105	109	Right-handed 310
Helix 36	AD9	L	112	117	Right-handed alpha
Helix 37	AE1	L	124	153	Right-handed alpha
Helix 38	AE2	L	153	175	Right-handed alpha
Helix 39	AE3	L	175	189	Right-handed alpha
Helix 40	AE4	L	190	209	Right-handed alpha
Helix 41	AE5	L	210	214	Right-handed 310
Helix 42	AE6	M	80	89	Right-handed alpha
Helix 43	AE7	M	105	109	Right-handed 310
Helix 44	AE8	M	112	117	Right-handed alpha
Helix 45	AE9	M	124	153	Right-handed alpha
Helix 46	AF1	M	153	175	Right-handed alpha
Helix 47	AF2	M	175	189	Right-handed alpha
Helix 48	AF3	M	190	210	Right-handed alpha
Helix 49	AF4	M	211	214	Right-handed 310
Helix 50	AF5	N	80	89	Right-handed alpha
Helix 51	AF6	N	105	109	Right-handed 310
Helix 52	AF7	N	112	117	Right-handed alpha
Helix 53	AF8	N	124	153	Right-handed alpha
Helix 54	AF9	N	153	175	Right-handed alpha
Helix 55	AG1	N	175	189	Right-handed alpha
Helix 56	AG2	N	190	210	Right-handed alpha
Helix 57	AG3	N	211	214	Right-handed 310
Helix 58	AG4	O	80	89	Right-handed alpha
Helix 59	AG5	O	105	109	Right-handed 310
Helix 60	AG6	O	112	117	Right-handed alpha
Helix 61	AG7	O	124	153	Right-handed alpha
Helix 62	AG8	O	153	175	Right-handed alpha
Helix 63	AG9	O	175	189	Right-handed alpha
Helix 64	AH1	O	190	210	Right-handed alpha
Helix 65	AH2	O	211	214	Right-handed 310
Helix 66	AH3	P	80	89	Right-handed alpha
Helix 67	AH4	P	105	109	Right-handed 310
Helix 68	AH5	P	112	117	Right-handed alpha
Helix 69	AH6	P	124	153	Right-handed alpha
Helix 70	AH7	P	153	175	Right-handed alpha
Helix 71	AH8	P	175	189	Right-handed alpha
Helix 72	AH9	P	190	209	Right-handed alpha
Helix 73	AI1	P	210	214	Right-handed 310
Helix 74	AI2	Q	80	89	Right-handed alpha
Helix 75	AI3	Q	105	109	Right-handed 310
Helix 76	AI4	Q	112	117	Right-handed alpha
Helix 77	AI5	Q	124	153	Right-handed alpha
Helix 78	AI6	Q	153	175	Right-handed alpha
Helix 79	AI7	Q	175	189	Right-handed alpha
Helix 80	AI8	Q	190	209	Right-handed alpha
Helix 81	AI9	Q	210	214	Right-handed 310
Helix 82	AJ1	R	80	89	Right-handed alpha
Helix 83	AJ2	R	105	109	Right-handed 310
Helix 84	AJ3	R	112	117	Right-handed alpha
Helix 85	AJ4	R	124	153	Right-handed alpha
Helix 86	AJ5	R	153	175	Right-handed alpha
Helix 87	AJ6	R	175	189	Right-handed alpha
Helix 88	AJ7	R	190	210	Right-handed alpha
Helix 89	AJ8	R	211	214	Right-handed 310

There is 1 sheet (AA1) in PDB entry 9DN1.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	216	230	first strand
Strand 2	L	216	230	parallel
Strand 3	K	216	230	parallel
Strand 4	J	216	230	parallel
Strand 5	I	216	230	parallel
Strand 6	M	216	230	parallel
Strand 7	N	216	230	parallel
Strand 8	O	216	230	parallel
Strand 9	P	216	230	parallel
Strand 10	Q	216	230	parallel
Strand 11	R	216	230	parallel
Strand 12	H	216	230	parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 9DN1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DN1