Analysis of interatomic Contacts of Structural Units in PDB entry:
9DN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DN5 entry

There are 2 chains in PDB entry 9DN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1433GLU 4091
C
 VAL 139ARG 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 9DN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1433 1461Right-handed alpha
Helix 2
AA2
A
1471 1494Right-handed alpha
Helix 3
AA3
A
1511 1520Right-handed alpha
Helix 4
AA4
A
1522 1534Right-handed alpha
Helix 5
AA5
A
1535 1540Right-handed 310
Helix 6
AA6
A
1541 1550Right-handed alpha
Helix 7
AA7
A
1558 1560Right-handed 310
Helix 8
AA8
A
1561 1566Right-handed alpha
Helix 9
AA9
A
1603 1632Right-handed alpha
Helix 10
AB1
A
1635 1640Right-handed alpha
Helix 11
AB2
A
1644 1666Right-handed alpha
Helix 12
AB3
A
1669 1688Right-handed alpha
Helix 13
AB4
A
1691 1717Right-handed alpha
Helix 14
AB5
A
1720 1730Right-handed alpha
Helix 15
AB6
A
1772 1787Right-handed alpha
Helix 16
AB7
A
1802 1813Right-handed alpha
Helix 17
AB8
A
1827 1842Right-handed alpha
Helix 18
AB9
A
1854 1861Right-handed alpha
Helix 19
AC1
A
1861 1875Right-handed alpha
Helix 20
AC2
A
1909 1914Right-handed alpha
Helix 21
AC3
A
1925 1938Right-handed alpha
Helix 22
AC4
A
1942 1959Right-handed alpha
Helix 23
AC5
A
1969 1981Right-handed alpha
Helix 24
AC6
A
1983 1988Right-handed alpha
Helix 25
AC7
A
1990 2003Right-handed alpha
Helix 26
AC8
A
2004 2006Right-handed 310
Helix 27
AC9
A
2008 2022Right-handed alpha
Helix 28
AD1
A
2031 2046Right-handed alpha
Helix 29
AD2
A
2050 2065Right-handed alpha
Helix 30
AD3
A
2079 2096Right-handed alpha
Helix 31
AD4
A
2110 2115Right-handed alpha
Helix 32
AD5
A
2128 2140Right-handed alpha
Helix 33
AD6
A
2159 2164Right-handed alpha
Helix 34
AD7
A
2166 2171Right-handed alpha
Helix 35
AD8
A
2203 2210Right-handed alpha
Helix 36
AD9
A
2221 2236Right-handed alpha
Helix 37
AE1
A
2246 2257Right-handed alpha
Helix 38
AE2
A
2258 2270Right-handed alpha
Helix 39
AE3
A
2279 2282Right-handed 310
Helix 40
AE4
A
2283 2299Right-handed alpha
Helix 41
AE5
A
2300 2302Right-handed 310
Helix 42
AE6
A
2306 2327Right-handed alpha
Helix 43
AE7
A
2331 2345Right-handed alpha
Helix 44
AE8
A
2372 2375Right-handed 310
Helix 45
AE9
A
2381 2385Right-handed 310
Helix 46
AF1
A
2394 2410Right-handed alpha
Helix 47
AF2
A
2423 2434Right-handed alpha
Helix 48
AF3
A
2450 2460Right-handed alpha
Helix 49
AF4
A
2500 2512Right-handed alpha
Helix 50
AF5
A
2547 2552Right-handed alpha
Helix 51
AF6
A
2563 2580Right-handed alpha
Helix 52
AF7
A
2581 2587Right-handed 310
Helix 53
AF8
A
2588 2607Right-handed alpha
Helix 54
AF9
A
2618 2635Right-handed alpha
Helix 55
AG1
A
2640 2656Right-handed alpha
Helix 56
AG2
A
2662 2681Right-handed alpha
Helix 57
AG3
A
2708 2727Right-handed alpha
Helix 58
AG4
A
2735 2751Right-handed alpha
Helix 59
AG5
A
2766 2778Right-handed alpha
Helix 60
AG6
A
2791 2808Right-handed alpha
Helix 61
AG7
A
2820 2822Right-handed 310
Helix 62
AG8
A
2824 2837Right-handed alpha
Helix 63
AG9
A
2846 2864Right-handed alpha
Helix 64
AH1
A
2869 2884Right-handed alpha
Helix 65
AH2
A
2896 2905Right-handed alpha
Helix 66
AH3
A
2905 2911Right-handed alpha
Helix 67
AH4
A
2921 2934Right-handed alpha
Helix 68
AH5
A
2960 2980Right-handed alpha
Helix 69
AH6
A
2989 3034Right-handed alpha
Helix 70
AH7
A
3290 3299Right-handed alpha
Helix 71
AH8
A
3299 3319Right-handed alpha
Helix 72
AH9
A
3319 3333Right-handed alpha
Helix 73
AI1
A
3338 3356Right-handed alpha
Helix 74
AI2
A
3365 3370Right-handed alpha
Helix 75
AI3
A
3372 3383Right-handed alpha
Helix 76
AI4
A
3387 3399Right-handed alpha
Helix 77
AI5
A
3413 3422Right-handed alpha
Helix 78
AI6
A
3423 3426Right-handed 310
Helix 79
AI7
A
3435 3447Right-handed alpha
Helix 80
AI8
A
3454 3458Right-handed 310
Helix 81
AI9
A
3459 3461Right-handed 310
Helix 82
AJ1
A
3462 3467Right-handed alpha
Helix 83
AJ2
A
3506 3511Right-handed alpha
Helix 84
AJ3
A
3521 3538Right-handed alpha
Helix 85
AJ4
A
3538 3572Right-handed alpha
Helix 86
AJ5
A
3583 3605Right-handed alpha
Helix 87
AJ6
A
3607 3639Right-handed alpha
Helix 88
AJ7
A
3640 3643Right-handed 310
Helix 89
AJ8
A
3645 3659Right-handed alpha
Helix 90
AJ9
A
3670 3688Right-handed alpha
Helix 91
AK1
A
3691 3711Right-handed alpha
Helix 92
AK2
A
3712 3728Right-handed alpha
Helix 93
AK3
A
3742 3753Right-handed alpha
Helix 94
AK4
A
3755 3767Right-handed alpha
Helix 95
AK5
A
3773 3780Right-handed alpha
Helix 96
AK6
A
3796 3807Right-handed alpha
Helix 97
AK7
A
3818 3835Right-handed alpha
Helix 98
AK8
A
3843 3846Right-handed 310
Helix 99
AK9
A
3847 3861Right-handed alpha
Helix 100
AL1
A
3885 3890Right-handed alpha
Helix 101
AL2
A
3903 3913Right-handed alpha
Helix 102
AL3
A
3923 3943Right-handed alpha
Helix 103
AL4
A
3957 3975Right-handed alpha
Helix 104
AL5
A
3981 3992Right-handed alpha
Helix 105
AL6
A
4000 4015Right-handed alpha
Helix 106
AL7
A
4037 4051Right-handed alpha
Helix 107
AL8
A
4066 4090Right-handed alpha
Helix 108
AL9
C
362 369Right-handed alpha
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There are 23 sheets in PDB entry 9DN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1569 1574first strand
Strand 2
A
1578 1584anti-parallel
Strand 3
A
1589 1597anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1733 1734first strand
Strand 2
A
1748 1751anti-parallel
Strand 3
A
1754 1757anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1817 1821first strand
Strand 2
A
1844 1848parallel
Strand 3
A
1893 1898parallel
Strand 4
A
1791 1795parallel
Strand 5
A
1916 1920parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1878 1880first strand
Strand 2
A
1885 1887anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2099 2104first strand
Strand 2
A
2149 2155parallel
Strand 3
A
2190 2196parallel
Strand 4
A
2069 2074parallel
Strand 5
A
2211 2215parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2116 2118first strand
Strand 2
A
2125 2127anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2175 2177first strand
Strand 2
A
2183 2185anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2357 2360first strand
Strand 2
A
2367 2370anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2440 2444first strand
Strand 2
A
2482 2487parallel
Strand 3
A
2529 2535parallel
Strand 4
A
2413 2417parallel
Strand 5
A
2554 2558parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2462 2465first strand
Strand 2
A
2472 2475anti-parallel
Strand 3
A
2522 2526parallel
Strand 4
A
2515 2517anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2696 2697first strand
Strand 2
A
2705 2706anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2780 2782first strand
Strand 2
A
2813 2818parallel
Strand 3
A
2885 2891parallel
Strand 4
A
2756 2759parallel
Strand 5
A
2914 2916parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3427 3430first strand
Strand 2
A
3450 3453parallel
Strand 3
A
3494 3498parallel
Strand 4
A
3405 3408parallel
Strand 5
A
3514 3517parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3471 3473first strand
Strand 2
A
3476 3481anti-parallel
Strand 3
A
3484 3488anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3813 3815first strand
Strand 2
A
3837 3842parallel
Strand 3
A
3871 3878parallel
Strand 4
A
3785 3790parallel
Strand 5
A
3893 3896parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4020 4021first strand
Strand 2
A
4029 4030anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 153first strand
Strand 2
C
488 493anti-parallel
Strand 3
C
479 484anti-parallel
Strand 4
C
461 465anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 163first strand
Strand 2
C
169 172anti-parallel
Strand 3
C
182 183anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 208first strand
Strand 2
C
220 226anti-parallel
Strand 3
C
231 236anti-parallel
Strand 4
C
243 249anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 264first strand
Strand 2
C
267 274anti-parallel
Strand 3
C
279 283anti-parallel
Strand 4
C
289 293anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 306first strand
Strand 2
C
309 314anti-parallel
Strand 3
C
319 323anti-parallel
Strand 4
C
328 333anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
340 346first strand
Strand 2
C
372 377anti-parallel
Strand 3
C
381 386anti-parallel
Strand 4
C
408 414anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
422 426first strand
Strand 2
C
429 433anti-parallel
Strand 3
C
438 443anti-parallel
Strand 4
C
449 454anti-parallel
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