Analysis of interatomic Contacts of Structural Units in PDB entry:
9DN6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DN6 entry

There are 3 chains in PDB entry 9DN6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LYS 130
B	SER 1	LYS 130
C	GLY 5	GLN 465

There are 44 helices in PDB entry 9DN6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	15	Right-handed alpha
Helix 2	AA2	A	17	32	Right-handed alpha
Helix 3	AA3	A	36	52	Right-handed alpha
Helix 4	AA4	A	55	87	Right-handed alpha
Helix 5	AA5	A	89	110	Right-handed alpha
Helix 6	AA6	A	111	130	Right-handed alpha
Helix 7	AA7	B	2	15	Right-handed alpha
Helix 8	AA8	B	17	32	Right-handed alpha
Helix 9	AA9	B	36	52	Right-handed alpha
Helix 10	AB1	B	55	87	Right-handed alpha
Helix 11	AB2	B	89	110	Right-handed alpha
Helix 12	AB3	B	111	130	Right-handed alpha
Helix 13	AB4	C	16	24	Right-handed 310
Helix 14	AB5	C	42	47	Right-handed alpha
Helix 15	AB6	C	71	75	Right-handed 310
Helix 16	AB7	C	132	137	Right-handed alpha
Helix 17	AB8	C	193	197	Right-handed 310
Helix 18	AB9	C	221	225	Right-handed 310
Helix 19	AC1	C	255	265	Right-handed alpha
Helix 20	AC2	C	314	318	Right-handed 310
Helix 21	AC3	C	323	330	Right-handed alpha
Helix 22	AC4	C	353	358	Right-handed alpha
Helix 23	AC5	C	435	447	Right-handed alpha
Helix 24	AC6	C	448	452	Right-handed 310
Helix 25	AC7	C	453	457	Right-handed 310
Helix 26	AC8	C	496	498	Right-handed 310
Helix 27	AC9	C	638	642	Right-handed 310
Helix 28	AD1	C	863	870	Right-handed alpha
Helix 29	AD2	D	16	24	Right-handed 310
Helix 30	AD3	D	42	47	Right-handed alpha
Helix 31	AD4	D	71	75	Right-handed 310
Helix 32	AD5	D	132	137	Right-handed alpha
Helix 33	AD6	D	193	197	Right-handed 310
Helix 34	AD7	D	221	225	Right-handed 310
Helix 35	AD8	D	255	265	Right-handed alpha
Helix 36	AD9	D	314	318	Right-handed 310
Helix 37	AE1	D	323	330	Right-handed alpha
Helix 38	AE2	D	353	358	Right-handed alpha
Helix 39	AE3	D	435	447	Right-handed alpha
Helix 40	AE4	D	448	452	Right-handed 310
Helix 41	AE5	D	453	457	Right-handed 310
Helix 42	AE6	D	496	498	Right-handed 310
Helix 43	AE7	D	638	642	Right-handed 310
Helix 44	AE8	D	863	870	Right-handed alpha

There are 28 sheets in PDB entry 9DN6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	9	first strand
Strand 2	C	28	30	parallel
Strand 3	C	56	57	parallel
Strand 4	C	81	82	parallel
Strand 5	C	111	112	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	35	36	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	122	first strand
Strand 2	C	145	148	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	233	first strand
Strand 2	C	236	238	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	312	first strand
Strand 2	C	335	336	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	321	first strand
Strand 2	C	340	342	parallel
Strand 3	C	368	371	parallel
Strand 4	C	402	403	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	366	first strand
Strand 2	C	387	392	parallel
Strand 3	C	420	421	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	477	first strand
Strand 2	C	485	489	anti-parallel
Strand 3	C	550	553	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	532	533	first strand
Strand 2	C	500	509	anti-parallel
Strand 3	C	561	570	anti-parallel
Strand 4	C	586	589	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	599	602	first strand
Strand 2	C	611	616	anti-parallel
Strand 3	C	767	770	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	762	first strand
Strand 2	C	627	634	anti-parallel
Strand 3	C	779	786	anti-parallel
Strand 4	C	799	801	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	819	823	first strand
Strand 2	C	827	831	anti-parallel
Strand 3	C	872	874	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	860	862	first strand
Strand 2	C	842	851	anti-parallel
Strand 3	C	881	890	anti-parallel
Strand 4	C	894	897	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	860	862	first strand
Strand 2	C	842	851	anti-parallel
Strand 3	C	881	890	anti-parallel
Strand 4	C	901	904	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	28	30	parallel
Strand 3	D	56	57	parallel
Strand 4	D	81	82	parallel
Strand 5	D	111	112	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	35	36	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	122	first strand
Strand 2	D	145	148	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	233	first strand
Strand 2	D	236	238	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	312	first strand
Strand 2	D	335	336	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	321	first strand
Strand 2	D	340	342	parallel
Strand 3	D	368	371	parallel
Strand 4	D	402	403	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	366	first strand
Strand 2	D	387	392	parallel
Strand 3	D	420	421	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	477	first strand
Strand 2	D	485	489	anti-parallel
Strand 3	D	550	553	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	532	533	first strand
Strand 2	D	500	509	anti-parallel
Strand 3	D	561	570	anti-parallel
Strand 4	D	586	589	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	599	602	first strand
Strand 2	D	611	616	anti-parallel
Strand 3	D	767	770	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	759	762	first strand
Strand 2	D	627	634	anti-parallel
Strand 3	D	779	786	anti-parallel
Strand 4	D	799	801	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	819	823	first strand
Strand 2	D	827	831	anti-parallel
Strand 3	D	872	874	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	860	862	first strand
Strand 2	D	842	851	anti-parallel
Strand 3	D	881	890	anti-parallel
Strand 4	D	894	897	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	860	862	first strand
Strand 2	D	842	851	anti-parallel
Strand 3	D	881	890	anti-parallel
Strand 4	D	901	904	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DN6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DN6