Analysis of interatomic Contacts of Structural Units in PDB entry:
9DND

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DND entry

There are 4 chains in PDB entry 9DND (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 20	CYS 223
C	LYS 2	THR 204
A	ALA 20	CYS 223
B	LYS 2	CYS 203

There are 42 helices in PDB entry 9DND. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	21	31	Right-handed alpha
Helix 2	AA2	D	40	54	Right-handed alpha
Helix 3	AA3	D	67	72	Right-handed alpha
Helix 4	AA4	D	75	80	Right-handed alpha
Helix 5	AA5	D	92	102	Right-handed alpha
Helix 6	AA6	D	113	124	Right-handed alpha
Helix 7	AA7	D	133	142	Right-handed alpha
Helix 8	AA8	D	183	189	Right-handed alpha
Helix 9	AA9	D	205	223	Right-handed alpha
Helix 10	AB1	C	3	11	Right-handed alpha
Helix 11	AB2	C	20	35	Right-handed alpha
Helix 12	AB3	C	47	55	Right-handed alpha
Helix 13	AB4	C	55	60	Right-handed alpha
Helix 14	AB5	C	72	83	Right-handed alpha
Helix 15	AB6	C	93	104	Right-handed alpha
Helix 16	AB7	C	113	122	Right-handed alpha
Helix 17	AB8	C	132	137	Right-handed alpha
Helix 18	AB9	C	137	144	Right-handed alpha
Helix 19	AC1	C	163	171	Right-handed alpha
Helix 20	AC2	C	185	204	Right-handed alpha
Helix 21	AC3	A	21	31	Right-handed alpha
Helix 22	AC4	A	40	54	Right-handed alpha
Helix 23	AC5	A	67	75	Right-handed alpha
Helix 24	AC6	A	75	80	Right-handed alpha
Helix 25	AC7	A	92	102	Right-handed alpha
Helix 26	AC8	A	113	124	Right-handed alpha
Helix 27	AC9	A	133	142	Right-handed alpha
Helix 28	AD1	A	152	157	Right-handed alpha
Helix 29	AD2	A	157	164	Right-handed alpha
Helix 30	AD3	A	183	188	Right-handed alpha
Helix 31	AD4	A	205	223	Right-handed alpha
Helix 32	AD5	B	3	11	Right-handed alpha
Helix 33	AD6	B	20	34	Right-handed alpha
Helix 34	AD7	B	48	55	Right-handed alpha
Helix 35	AD8	B	56	62	Right-handed alpha
Helix 36	AD9	B	72	82	Right-handed alpha
Helix 37	AE1	B	93	104	Right-handed alpha
Helix 38	AE2	B	113	122	Right-handed alpha
Helix 39	AE3	B	132	137	Right-handed alpha
Helix 40	AE4	B	137	145	Right-handed alpha
Helix 41	AE5	B	163	171	Right-handed alpha
Helix 42	AE6	B	185	202	Right-handed alpha

There are 12 sheets in PDB entry 9DND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	58	62	parallel
Strand 3	D	32	36	parallel
Strand 4	D	195	197	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	126	128	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	147	150	parallel
Strand 3	D	172	175	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	68	first strand
Strand 2	C	38	42	parallel
Strand 3	C	12	16	parallel
Strand 4	C	175	177	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	106	108	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	127	130	parallel
Strand 3	C	152	153	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	58	62	parallel
Strand 3	A	32	36	parallel
Strand 4	A	195	197	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	126	128	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	147	150	parallel
Strand 3	A	172	175	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	38	42	parallel
Strand 3	B	12	16	parallel
Strand 4	B	175	177	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	106	108	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	127	130	parallel
Strand 3	B	152	155	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DND

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DND