Analysis of interatomic Contacts of Structural Units in PDB entry:
9DNG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DNG entry

There are 3 chains in PDB entry 9DNG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 4ALA 128
L
 ASP 2LYS 109
A
 VAL 8ARG 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9DNG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
31 35Right-handed 310
Helix 2
AA2
H
77 79Right-handed 310
Helix 3
AA3
H
90 94Right-handed 310
Helix 4
AA4
H
107 112Right-handed alpha
Helix 5
AA5
L
94 98Right-handed 310
Helix 6
AA6
A
98 104Right-handed alpha
Helix 7
AA7
A
105 107Right-handed 310
Helix 8
AA8
A
159 163Right-handed 310
Helix 9
AA9
A
179 196Right-handed alpha
Helix 10
AB1
A
198 218Right-handed alpha
Helix 11
AB2
A
231 258Right-handed alpha
Helix 12
AB3
A
259 282Right-handed alpha
Helix 13
AB4
A
378 383Right-handed alpha
Helix 14
AB5
A
413 416Right-handed 310
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There are 12 sheets in PDB entry 9DNG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
20 28anti-parallel
Strand 3
H
81 87anti-parallel
Strand 4
H
72 76anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 15first strand
Strand 2
H
124 125parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
61 63first strand
Strand 2
H
48 54anti-parallel
Strand 3
H
36 42anti-parallel
Strand 4
H
96 102anti-parallel
Strand 5
H
121 122anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 6first strand
Strand 2
L
19 26anti-parallel
Strand 3
L
71 77anti-parallel
Strand 4
L
63 68anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
104 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
47 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
104 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
99 100anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
19 22anti-parallel
Strand 4
A
9 12anti-parallel
Strand 5
A
490 491parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
169 171parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
141 151anti-parallel
Strand 3
A
164 166anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
141 151anti-parallel
Strand 3
A
127 129anti-parallel
Strand 4
A
389 390anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 289first strand
Strand 2
A
298 304anti-parallel
Strand 3
A
315 323anti-parallel
Strand 4
A
367 375anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
445 453parallel
Strand 3
A
418 428anti-parallel
Strand 4
A
332 342anti-parallel
Strand 5
A
349 359anti-parallel
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