Analysis of interatomic Contacts of Structural Units in PDB entry:
9DNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DNL entry

There are 4 chains in PDB entry 9DNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9GLU 192
B
 ASP 9GLU 192
C
 ASP 9GLU 192
D
 ASP 9GLU 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9DNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 26Right-handed alpha
Helix 2
AA2
A
27 29Right-handed 310
Helix 3
AA3
A
30 39Right-handed alpha
Helix 4
AA4
A
41 49Right-handed alpha
Helix 5
AA5
A
51 74Right-handed alpha
Helix 6
AA6
A
82 100Right-handed alpha
Helix 7
AA7
A
100 112Right-handed alpha
Helix 8
AA8
A
117 128Right-handed alpha
Helix 9
AA9
A
128 139Right-handed alpha
Helix 10
AB1
A
140 145Right-handed 310
Helix 11
AB2
A
148 170Right-handed alpha
Helix 12
AB3
A
173 190Right-handed alpha
Helix 13
AB4
B
10 26Right-handed alpha
Helix 14
AB5
B
27 29Right-handed 310
Helix 15
AB6
B
30 39Right-handed alpha
Helix 16
AB7
B
41 49Right-handed alpha
Helix 17
AB8
B
51 74Right-handed alpha
Helix 18
AB9
B
82 100Right-handed alpha
Helix 19
AC1
B
100 112Right-handed alpha
Helix 20
AC2
B
117 128Right-handed alpha
Helix 21
AC3
B
128 139Right-handed alpha
Helix 22
AC4
B
140 145Right-handed 310
Helix 23
AC5
B
148 170Right-handed alpha
Helix 24
AC6
B
173 190Right-handed alpha
Helix 25
AC7
C
10 26Right-handed alpha
Helix 26
AC8
C
27 29Right-handed 310
Helix 27
AC9
C
30 39Right-handed alpha
Helix 28
AD1
C
41 49Right-handed alpha
Helix 29
AD2
C
51 74Right-handed alpha
Helix 30
AD3
C
82 100Right-handed alpha
Helix 31
AD4
C
100 112Right-handed alpha
Helix 32
AD5
C
117 128Right-handed alpha
Helix 33
AD6
C
128 139Right-handed alpha
Helix 34
AD7
C
140 145Right-handed 310
Helix 35
AD8
C
148 170Right-handed alpha
Helix 36
AD9
C
173 190Right-handed alpha
Helix 37
AE1
D
10 26Right-handed alpha
Helix 38
AE2
D
27 29Right-handed 310
Helix 39
AE3
D
30 39Right-handed alpha
Helix 40
AE4
D
41 49Right-handed alpha
Helix 41
AE5
D
51 75Right-handed alpha
Helix 42
AE6
D
81 100Right-handed alpha
Helix 43
AE7
D
100 112Right-handed alpha
Helix 44
AE8
D
117 128Right-handed alpha
Helix 45
AE9
D
128 139Right-handed alpha
Helix 46
AF1
D
140 145Right-handed 310
Helix 47
AF2
D
148 170Right-handed alpha
Helix 48
AF3
D
173 190Right-handed alpha
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There are no sheets in PDB entry 9DNL
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