Analysis of interatomic Contacts of Structural Units in PDB entry:
9DNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DNM entry

There are 3 chains in PDB entry 9DNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 4ALA 128
L
 ASP 2LYS 109
A
 THR 6PHE 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9DNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
31 35Right-handed 310
Helix 2
AA2
L
80 84Right-handed 310
Helix 3
AA3
A
98 108Right-handed alpha
Helix 4
AA4
A
159 161Right-handed 310
Helix 5
AA5
A
177 195Right-handed alpha
Helix 6
AA6
A
198 219Right-handed alpha
Helix 7
AA7
A
221 225Right-handed 310
Helix 8
AA8
A
231 258Right-handed alpha
Helix 9
AA9
A
259 268Right-handed alpha
Helix 10
AB1
A
269 282Right-handed alpha
Helix 11
AB2
A
378 383Right-handed 310
Helix 12
AB3
A
412 416Right-handed 310
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There are 11 sheets in PDB entry 9DNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
21 28anti-parallel
Strand 3
H
81 86anti-parallel
Strand 4
H
72 76anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 15first strand
Strand 2
H
121 125parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
36 42anti-parallel
Strand 5
H
48 54anti-parallel
Strand 6
H
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 67anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
104 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
104 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
99 100anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
18 22anti-parallel
Strand 4
A
7 11anti-parallel
Strand 5
A
488 491parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 85first strand
Strand 2
A
52 61anti-parallel
Strand 3
A
142 151anti-parallel
Strand 4
A
163 168anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
389 390anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 289first strand
Strand 2
A
298 304anti-parallel
Strand 3
A
315 322anti-parallel
Strand 4
A
368 375anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
451 453parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
329 343anti-parallel
Strand 3
A
417 430anti-parallel
Strand 4
A
444 447anti-parallel
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