Analysis of interatomic Contacts of Structural Units in PDB entry:
9DNN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DNN entry

There is 1 chain in PDB entry 9DNN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 1	LEU 655

There are 38 helices in PDB entry 9DNN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	26	Right-handed 310
Helix 2	AA2	A	43	48	Right-handed alpha
Helix 3	AA3	A	132	137	Right-handed alpha
Helix 4	AA4	A	255	268	Right-handed alpha
Helix 5	AA5	A	314	316	Right-handed 310
Helix 6	AA6	A	323	330	Right-handed alpha
Helix 7	AA7	A	350	358	Right-handed alpha
Helix 8	AA8	A	435	447	Right-handed alpha
Helix 9	AA9	A	496	498	Right-handed 310
Helix 10	AB1	A	641	646	Right-handed alpha
Helix 11	AB2	A	689	716	Right-handed alpha
Helix 12	AB3	A	864	872	Right-handed alpha
Helix 13	AB4	B	17	26	Right-handed 310
Helix 14	AB5	B	43	48	Right-handed alpha
Helix 15	AB6	B	132	136	Right-handed 310
Helix 16	AB7	B	255	268	Right-handed alpha
Helix 17	AB8	B	314	316	Right-handed 310
Helix 18	AB9	B	323	330	Right-handed alpha
Helix 19	AC1	B	350	358	Right-handed alpha
Helix 20	AC2	B	435	447	Right-handed alpha
Helix 21	AC3	B	496	498	Right-handed 310
Helix 22	AC4	B	641	646	Right-handed alpha
Helix 23	AC5	B	689	716	Right-handed alpha
Helix 24	AC6	B	864	872	Right-handed alpha
Helix 25	AC7	C	7	19	Right-handed alpha
Helix 26	AC8	C	57	62	Right-handed alpha
Helix 27	AC9	C	68	73	Right-handed alpha
Helix 28	AD1	D	7	19	Right-handed alpha
Helix 29	AD2	D	57	62	Right-handed alpha
Helix 30	AD3	D	68	73	Right-handed alpha
Helix 31	AD4	E	2	15	Right-handed alpha
Helix 32	AD5	E	18	33	Right-handed alpha
Helix 33	AD6	E	36	52	Right-handed alpha
Helix 34	AD7	E	53	64	Right-handed alpha
Helix 35	AD8	F	2	15	Right-handed alpha
Helix 36	AD9	F	18	33	Right-handed alpha
Helix 37	AE1	F	36	52	Right-handed alpha
Helix 38	AE2	F	53	64	Right-handed alpha

There are 34 sheets in PDB entry 9DNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	60	66	parallel
Strand 3	A	93	96	parallel
Strand 4	A	117	120	parallel
Strand 5	A	144	145	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	81	82	parallel
Strand 3	A	111	112	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	178	180	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	187	188	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	237	238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	252	254	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	283	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	294	first strand
Strand 2	A	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	339	343	parallel
Strand 3	A	368	371	parallel
Strand 4	A	398	403	parallel
Strand 5	A	425	427	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	363	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	480	first strand
Strand 2	A	485	489	anti-parallel
Strand 3	A	553	555	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	534	first strand
Strand 2	A	500	509	anti-parallel
Strand 3	A	563	572	anti-parallel
Strand 4	A	588	591	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	607	first strand
Strand 2	A	613	618	anti-parallel
Strand 3	A	769	771	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	630	first strand
Strand 2	A	787	788	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	762	first strand
Strand 2	A	632	637	anti-parallel
Strand 3	A	780	785	anti-parallel
Strand 4	A	801	806	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	824	first strand
Strand 2	A	830	834	anti-parallel
Strand 3	A	874	876	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	859	first strand
Strand 2	A	844	853	anti-parallel
Strand 3	A	882	892	anti-parallel
Strand 4	A	905	907	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	61	66	parallel
Strand 3	B	93	96	parallel
Strand 4	B	117	120	parallel
Strand 5	B	144	145	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	81	82	parallel
Strand 3	B	111	112	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	178	180	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	184	first strand
Strand 2	B	187	188	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	237	238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	248	first strand
Strand 2	B	252	254	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	280	first strand
Strand 2	B	283	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	294	first strand
Strand 2	B	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	339	342	parallel
Strand 3	B	368	371	parallel
Strand 4	B	398	403	parallel
Strand 5	B	425	427	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	363	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	485	489	anti-parallel
Strand 3	B	553	555	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	500	509	anti-parallel
Strand 3	B	563	572	anti-parallel
Strand 4	B	588	591	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	600	607	first strand
Strand 2	B	613	620	anti-parallel
Strand 3	B	769	771	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	630	first strand
Strand 2	B	787	788	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	762	first strand
Strand 2	B	632	637	anti-parallel
Strand 3	B	780	785	anti-parallel
Strand 4	B	801	806	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	824	first strand
Strand 2	B	830	834	anti-parallel
Strand 3	B	874	876	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	859	first strand
Strand 2	B	844	853	anti-parallel
Strand 3	B	882	892	anti-parallel
Strand 4	B	905	907	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DNN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DNN