Analysis of interatomic Contacts of Structural Units in PDB entry:
9DNS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DNS entry

There are 7 chains in PDB entry 9DNS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	HIS 3262
D	ALA 2	MET 147
E	ALA 2	MET 147
U	MET 1	GLY 76
V	MET 1	LEU 73
W	MET 1	LEU 71
X	MET 1	LEU 71

There are172 helices in PDB entry 9DNS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	18	Right-handed alpha
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	30	39	Right-handed alpha
Helix 4	AA4	A	54	72	Right-handed alpha
Helix 5	AA5	A	90	110	Right-handed alpha
Helix 6	AA6	A	113	117	Right-handed 310
Helix 7	AA7	A	120	127	Right-handed alpha
Helix 8	AA8	A	131	152	Right-handed alpha
Helix 9	AA9	A	164	176	Right-handed alpha
Helix 10	AB1	A	193	197	Right-handed 310
Helix 11	AB2	A	203	208	Right-handed alpha
Helix 12	AB3	A	242	249	Right-handed alpha
Helix 13	AB4	A	250	260	Right-handed alpha
Helix 14	AB5	A	263	265	Right-handed 310
Helix 15	AB6	A	266	282	Right-handed alpha
Helix 16	AB7	A	284	306	Right-handed alpha
Helix 17	AB8	A	310	318	Right-handed alpha
Helix 18	AB9	A	324	333	Right-handed alpha
Helix 19	AC1	A	341	357	Right-handed alpha
Helix 20	AC2	A	358	360	Right-handed 310
Helix 21	AC3	A	361	370	Right-handed alpha
Helix 22	AC4	A	376	391	Right-handed alpha
Helix 23	AC5	A	397	413	Right-handed alpha
Helix 24	AC6	A	414	425	Right-handed alpha
Helix 25	AC7	A	425	435	Right-handed alpha
Helix 26	AC8	A	441	456	Right-handed alpha
Helix 27	AC9	A	458	468	Right-handed alpha
Helix 28	AD1	A	469	488	Right-handed alpha
Helix 29	AD2	A	489	492	Right-handed 310
Helix 30	AD3	A	506	526	Right-handed alpha
Helix 31	AD4	A	530	536	Right-handed alpha
Helix 32	AD5	A	538	549	Right-handed alpha
Helix 33	AD6	A	549	554	Right-handed alpha
Helix 34	AD7	A	554	571	Right-handed alpha
Helix 35	AD8	A	572	574	Right-handed 310
Helix 36	AD9	A	575	582	Right-handed alpha
Helix 37	AE1	A	583	591	Right-handed alpha
Helix 38	AE2	A	591	596	Right-handed alpha
Helix 39	AE3	A	599	615	Right-handed alpha
Helix 40	AE4	A	616	627	Right-handed alpha
Helix 41	AE5	A	627	635	Right-handed alpha
Helix 42	AE6	A	638	646	Right-handed alpha
Helix 43	AE7	A	649	665	Right-handed alpha
Helix 44	AE8	A	668	683	Right-handed alpha
Helix 45	AE9	A	684	687	Right-handed 310
Helix 46	AF1	A	723	726	Right-handed 310
Helix 47	AF2	A	727	747	Right-handed alpha
Helix 48	AF3	A	748	753	Right-handed 310
Helix 49	AF4	A	758	767	Right-handed alpha
Helix 50	AF5	A	778	795	Right-handed alpha
Helix 51	AF6	A	799	814	Right-handed alpha
Helix 52	AF7	A	814	819	Right-handed alpha
Helix 53	AF8	A	825	830	Right-handed alpha
Helix 54	AF9	A	833	857	Right-handed alpha
Helix 55	AG1	A	864	879	Right-handed alpha
Helix 56	AG2	A	880	902	Right-handed alpha
Helix 57	AG3	A	905	912	Right-handed alpha
Helix 58	AG4	A	945	975	Right-handed alpha
Helix 59	AG5	A	976	979	Right-handed 310
Helix 60	AG6	A	984	1009	Right-handed alpha
Helix 61	AG7	A	1014	1029	Right-handed alpha
Helix 62	AG8	A	1043	1053	Right-handed alpha
Helix 63	AG9	A	1054	1072	Right-handed alpha
Helix 64	AH1	A	1077	1081	Right-handed 310
Helix 65	AH2	A	1088	1107	Right-handed alpha
Helix 66	AH3	A	1108	1113	Right-handed 310
Helix 67	AH4	A	1118	1122	Right-handed 310
Helix 68	AH5	A	1131	1154	Right-handed alpha
Helix 69	AH6	A	1166	1181	Right-handed alpha
Helix 70	AH7	A	1195	1199	Right-handed 310
Helix 71	AH8	A	1202	1213	Right-handed alpha
Helix 72	AH9	A	1215	1227	Right-handed alpha
Helix 73	AI1	A	1233	1237	Right-handed 310
Helix 74	AI2	A	1240	1251	Right-handed alpha
Helix 75	AI3	A	1255	1259	Right-handed 310
Helix 76	AI4	A	1272	1286	Right-handed alpha
Helix 77	AI5	A	1287	1292	Right-handed alpha
Helix 78	AI6	A	1293	1301	Right-handed 310
Helix 79	AI7	A	1302	1317	Right-handed alpha
Helix 80	AI8	A	1320	1335	Right-handed alpha
Helix 81	AI9	A	1339	1356	Right-handed alpha
Helix 82	AJ1	A	1356	1362	Right-handed alpha
Helix 83	AJ2	A	1363	1378	Right-handed alpha
Helix 84	AJ3	A	1379	1383	Right-handed 310
Helix 85	AJ4	A	1385	1403	Right-handed alpha
Helix 86	AJ5	A	1430	1443	Right-handed alpha
Helix 87	AJ6	A	1449	1464	Right-handed alpha
Helix 88	AJ7	A	1466	1477	Right-handed alpha
Helix 89	AJ8	A	1477	1489	Right-handed alpha
Helix 90	AJ9	A	1494	1511	Right-handed alpha
Helix 91	AK1	A	1512	1530	Right-handed alpha
Helix 92	AK2	A	1543	1550	Right-handed alpha
Helix 93	AK3	A	1550	1557	Right-handed alpha
Helix 94	AK4	A	1557	1569	Right-handed alpha
Helix 95	AK5	A	1611	1626	Right-handed alpha
Helix 96	AK6	A	1647	1650	Right-handed 310
Helix 97	AK7	A	1651	1671	Right-handed alpha
Helix 98	AK8	A	1671	1680	Right-handed alpha
Helix 99	AK9	A	1695	1704	Right-handed alpha
Helix 100	AL1	A	1717	1738	Right-handed alpha
Helix 101	AL2	A	1754	1777	Right-handed alpha
Helix 102	AL3	A	1778	1802	Right-handed alpha
Helix 103	AL4	A	1807	1811	Right-handed 310
Helix 104	AL5	A	1812	1830	Right-handed alpha
Helix 105	AL6	A	1831	1842	Right-handed alpha
Helix 106	AL7	A	1849	1871	Right-handed alpha
Helix 107	AL8	A	2226	2239	Right-handed alpha
Helix 108	AL9	A	2245	2247	Right-handed 310
Helix 109	AM1	A	2248	2256	Right-handed alpha
Helix 110	AM2	A	2259	2276	Right-handed alpha
Helix 111	AM3	A	2456	2465	Right-handed alpha
Helix 112	AM4	A	2466	2469	Right-handed 310
Helix 113	AM5	A	2472	2475	Right-handed 310
Helix 114	AM6	A	2476	2487	Right-handed alpha
Helix 115	AM7	A	2489	2507	Right-handed alpha
Helix 116	AM8	A	2510	2527	Right-handed alpha
Helix 117	AM9	A	2542	2561	Right-handed alpha
Helix 118	AN1	A	2563	2570	Right-handed alpha
Helix 119	AN2	A	2592	2595	Right-handed 310
Helix 120	AN3	A	2596	2605	Right-handed alpha
Helix 121	AN4	A	2607	2612	Right-handed alpha
Helix 122	AN5	A	2613	2637	Right-handed alpha
Helix 123	AN6	A	2654	2667	Right-handed alpha
Helix 124	AN7	A	2671	2687	Right-handed alpha
Helix 125	AN8	A	2690	2724	Right-handed alpha
Helix 126	AN9	A	2731	2740	Right-handed alpha
Helix 127	AO1	A	2743	2761	Right-handed alpha
Helix 128	AO2	A	2765	2780	Right-handed alpha
Helix 129	AO3	A	2782	2799	Right-handed alpha
Helix 130	AO4	A	2804	2808	Right-handed 310
Helix 131	AO5	A	2809	2819	Right-handed alpha
Helix 132	AO6	A	2848	2859	Right-handed alpha
Helix 133	AO7	A	2859	2870	Right-handed alpha
Helix 134	AO8	A	2871	2884	Right-handed 310
Helix 135	AO9	A	2889	2902	Right-handed alpha
Helix 136	AP1	A	2919	2930	Right-handed alpha
Helix 137	AP2	A	2932	2939	Right-handed alpha
Helix 138	AP3	A	2952	2969	Right-handed alpha
Helix 139	AP4	A	2970	2974	Right-handed 310
Helix 140	AP5	A	2990	2995	Right-handed 310
Helix 141	AP6	A	2997	3016	Right-handed alpha
Helix 142	AP7	A	3024	3032	Right-handed alpha
Helix 143	AP8	A	3037	3045	Right-handed alpha
Helix 144	AP9	A	3045	3057	Right-handed alpha
Helix 145	AQ1	A	3096	3110	Right-handed alpha
Helix 146	AQ2	A	3113	3126	Right-handed alpha
Helix 147	AQ3	A	3129	3134	Right-handed alpha
Helix 148	AQ4	A	3137	3147	Right-handed alpha
Helix 149	AQ5	A	3153	3159	Right-handed alpha
Helix 150	AQ6	A	3169	3181	Right-handed alpha
Helix 151	AQ7	A	3183	3196	Right-handed alpha
Helix 152	AQ8	A	3204	3207	Right-handed 310
Helix 153	AQ9	A	3234	3236	Right-handed 310
Helix 154	AR1	A	3246	3262	Right-handed alpha
Helix 155	AR2	D	3	16	Right-handed alpha
Helix 156	AR3	D	86	91	Right-handed alpha
Helix 157	AR4	D	98	112	Right-handed alpha
Helix 158	AR5	D	120	130	Right-handed alpha
Helix 159	AR6	D	130	145	Right-handed alpha
Helix 160	AR7	E	3	16	Right-handed alpha
Helix 161	AR8	E	98	112	Right-handed alpha
Helix 162	AR9	E	120	130	Right-handed alpha
Helix 163	AS1	E	130	146	Right-handed alpha
Helix 164	AS2	U	22	35	Right-handed alpha
Helix 165	AS3	V	22	35	Right-handed alpha
Helix 166	AS4	V	37	39	Right-handed 310
Helix 167	AS5	V	55	60	Right-handed alpha
Helix 168	AS6	W	22	34	Right-handed alpha
Helix 169	AS7	W	55	60	Right-handed alpha
Helix 170	AS8	X	22	35	Right-handed alpha
Helix 171	AS9	X	37	41	Right-handed 310
Helix 172	AT1	X	56	60	Right-handed 310

There are 16 sheets in PDB entry 9DNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	111	112	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	189	191	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	213	first strand
Strand 2	A	237	241	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1030	1031	first strand
Strand 2	A	1041	1042	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1541	1542	first strand
Strand 2	A	1584	1585	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2910	2912	first strand
Strand 2	A	2940	2942	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2976	2979	first strand
Strand 2	A	2982	2988	anti-parallel
Strand 3	A	3022	3023	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3069	3074	first strand
Strand 2	A	3077	3082	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3160	3163	first strand
Strand 2	A	3217	3221	parallel
Strand 3	A	3238	3241	parallel
Strand 4	A	3231	3233	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3209	3210	first strand
Strand 2	A	3213	3214	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	26	first strand
Strand 2	D	29	38	anti-parallel
Strand 3	D	49	55	anti-parallel
Strand 4	D	66	69	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	26	first strand
Strand 2	E	29	38	anti-parallel
Strand 3	E	49	55	anti-parallel
Strand 4	E	66	69	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	12	16	first strand
Strand 2	U	2	6	anti-parallel
Strand 3	U	66	71	parallel
Strand 4	U	41	45	anti-parallel
Strand 5	U	48	49	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	12	16	first strand
Strand 2	V	2	7	anti-parallel
Strand 3	V	66	71	parallel
Strand 4	V	41	45	anti-parallel
Strand 5	V	48	49	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	12	16	first strand
Strand 2	W	2	7	anti-parallel
Strand 3	W	66	70	parallel
Strand 4	W	42	45	anti-parallel
Strand 5	W	48	49	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	12	16	first strand
Strand 2	X	2	7	anti-parallel
Strand 3	X	66	70	parallel
Strand 4	X	42	45	anti-parallel
Strand 5	X	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DNS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DNS