Analysis of interatomic Contacts of Structural Units in PDB entry:
9DNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DNT entry

There is 1 chain in PDB entry 9DNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9HIS 3262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are144 helices in PDB entry 9DNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 28Right-handed alpha
Helix 2
AA2
A
30 39Right-handed alpha
Helix 3
AA3
A
54 73Right-handed alpha
Helix 4
AA4
A
90 110Right-handed alpha
Helix 5
AA5
A
113 117Right-handed 310
Helix 6
AA6
A
119 127Right-handed alpha
Helix 7
AA7
A
131 145Right-handed alpha
Helix 8
AA8
A
146 152Right-handed alpha
Helix 9
AA9
A
164 176Right-handed alpha
Helix 10
AB1
A
193 197Right-handed 310
Helix 11
AB2
A
242 249Right-handed alpha
Helix 12
AB3
A
250 260Right-handed alpha
Helix 13
AB4
A
263 281Right-handed alpha
Helix 14
AB5
A
285 309Right-handed alpha
Helix 15
AB6
A
310 318Right-handed alpha
Helix 16
AB7
A
324 333Right-handed alpha
Helix 17
AB8
A
341 358Right-handed alpha
Helix 18
AB9
A
358 370Right-handed alpha
Helix 19
AC1
A
376 392Right-handed alpha
Helix 20
AC2
A
397 413Right-handed alpha
Helix 21
AC3
A
414 425Right-handed alpha
Helix 22
AC4
A
425 435Right-handed alpha
Helix 23
AC5
A
441 456Right-handed alpha
Helix 24
AC6
A
458 468Right-handed alpha
Helix 25
AC7
A
469 488Right-handed alpha
Helix 26
AC8
A
489 492Right-handed 310
Helix 27
AC9
A
506 526Right-handed alpha
Helix 28
AD1
A
526 531Right-handed alpha
Helix 29
AD2
A
538 549Right-handed alpha
Helix 30
AD3
A
549 571Right-handed alpha
Helix 31
AD4
A
572 574Right-handed 310
Helix 32
AD5
A
575 583Right-handed alpha
Helix 33
AD6
A
583 591Right-handed alpha
Helix 34
AD7
A
591 596Right-handed alpha
Helix 35
AD8
A
599 615Right-handed alpha
Helix 36
AD9
A
616 627Right-handed alpha
Helix 37
AE1
A
627 635Right-handed alpha
Helix 38
AE2
A
638 645Right-handed alpha
Helix 39
AE3
A
648 665Right-handed alpha
Helix 40
AE4
A
665 687Right-handed alpha
Helix 41
AE5
A
727 746Right-handed alpha
Helix 42
AE6
A
747 753Right-handed 310
Helix 43
AE7
A
758 767Right-handed alpha
Helix 44
AE8
A
774 777Right-handed 310
Helix 45
AE9
A
778 795Right-handed alpha
Helix 46
AF1
A
799 814Right-handed alpha
Helix 47
AF2
A
814 819Right-handed alpha
Helix 48
AF3
A
825 831Right-handed alpha
Helix 49
AF4
A
834 857Right-handed alpha
Helix 50
AF5
A
859 863Right-handed 310
Helix 51
AF6
A
864 879Right-handed alpha
Helix 52
AF7
A
880 902Right-handed alpha
Helix 53
AF8
A
905 912Right-handed alpha
Helix 54
AF9
A
945 975Right-handed alpha
Helix 55
AG1
A
976 979Right-handed 310
Helix 56
AG2
A
984 1009Right-handed alpha
Helix 57
AG3
A
1014 1029Right-handed alpha
Helix 58
AG4
A
1043 1053Right-handed alpha
Helix 59
AG5
A
1054 1072Right-handed alpha
Helix 60
AG6
A
1077 1082Right-handed 310
Helix 61
AG7
A
1088 1107Right-handed alpha
Helix 62
AG8
A
1109 1113Right-handed 310
Helix 63
AG9
A
1118 1122Right-handed 310
Helix 64
AH1
A
1131 1154Right-handed alpha
Helix 65
AH2
A
1166 1181Right-handed alpha
Helix 66
AH3
A
1202 1213Right-handed alpha
Helix 67
AH4
A
1215 1226Right-handed alpha
Helix 68
AH5
A
1233 1237Right-handed 310
Helix 69
AH6
A
1240 1251Right-handed alpha
Helix 70
AH7
A
1255 1259Right-handed 310
Helix 71
AH8
A
1272 1285Right-handed alpha
Helix 72
AH9
A
1287 1296Right-handed alpha
Helix 73
AI1
A
1297 1301Right-handed 310
Helix 74
AI2
A
1302 1318Right-handed alpha
Helix 75
AI3
A
1320 1335Right-handed alpha
Helix 76
AI4
A
1339 1356Right-handed alpha
Helix 77
AI5
A
1356 1363Right-handed alpha
Helix 78
AI6
A
1363 1378Right-handed alpha
Helix 79
AI7
A
1379 1383Right-handed 310
Helix 80
AI8
A
1385 1403Right-handed alpha
Helix 81
AI9
A
1430 1443Right-handed alpha
Helix 82
AJ1
A
1449 1464Right-handed alpha
Helix 83
AJ2
A
1466 1477Right-handed alpha
Helix 84
AJ3
A
1477 1489Right-handed alpha
Helix 85
AJ4
A
1494 1511Right-handed alpha
Helix 86
AJ5
A
1512 1530Right-handed alpha
Helix 87
AJ6
A
1543 1550Right-handed alpha
Helix 88
AJ7
A
1550 1557Right-handed alpha
Helix 89
AJ8
A
1557 1569Right-handed alpha
Helix 90
AJ9
A
1611 1626Right-handed alpha
Helix 91
AK1
A
1651 1671Right-handed alpha
Helix 92
AK2
A
1671 1680Right-handed alpha
Helix 93
AK3
A
1695 1704Right-handed alpha
Helix 94
AK4
A
1717 1738Right-handed alpha
Helix 95
AK5
A
1754 1777Right-handed alpha
Helix 96
AK6
A
1777 1785Right-handed alpha
Helix 97
AK7
A
1785 1802Right-handed alpha
Helix 98
AK8
A
1817 1831Right-handed alpha
Helix 99
AK9
A
1831 1842Right-handed alpha
Helix 100
AL1
A
1849 1868Right-handed alpha
Helix 101
AL2
A
2226 2239Right-handed alpha
Helix 102
AL3
A
2243 2247Right-handed 310
Helix 103
AL4
A
2248 2264Right-handed alpha
Helix 104
AL5
A
2458 2465Right-handed alpha
Helix 105
AL6
A
2466 2469Right-handed 310
Helix 106
AL7
A
2477 2487Right-handed alpha
Helix 107
AL8
A
2489 2507Right-handed alpha
Helix 108
AL9
A
2510 2527Right-handed alpha
Helix 109
AM1
A
2542 2561Right-handed alpha
Helix 110
AM2
A
2562 2570Right-handed alpha
Helix 111
AM3
A
2597 2605Right-handed alpha
Helix 112
AM4
A
2607 2612Right-handed alpha
Helix 113
AM5
A
2613 2637Right-handed alpha
Helix 114
AM6
A
2654 2667Right-handed alpha
Helix 115
AM7
A
2671 2688Right-handed alpha
Helix 116
AM8
A
2691 2724Right-handed alpha
Helix 117
AM9
A
2731 2740Right-handed alpha
Helix 118
AN1
A
2743 2759Right-handed alpha
Helix 119
AN2
A
2770 2780Right-handed alpha
Helix 120
AN3
A
2782 2799Right-handed alpha
Helix 121
AN4
A
2806 2808Right-handed 310
Helix 122
AN5
A
2809 2819Right-handed alpha
Helix 123
AN6
A
2851 2857Right-handed alpha
Helix 124
AN7
A
2859 2870Right-handed alpha
Helix 125
AN8
A
2871 2884Right-handed 310
Helix 126
AN9
A
2889 2902Right-handed alpha
Helix 127
AO1
A
2919 2929Right-handed alpha
Helix 128
AO2
A
2932 2939Right-handed alpha
Helix 129
AO3
A
2957 2969Right-handed alpha
Helix 130
AO4
A
2970 2974Right-handed 310
Helix 131
AO5
A
2997 3016Right-handed alpha
Helix 132
AO6
A
3024 3032Right-handed alpha
Helix 133
AO7
A
3037 3044Right-handed 310
Helix 134
AO8
A
3046 3056Right-handed alpha
Helix 135
AO9
A
3093 3096Right-handed 310
Helix 136
AP1
A
3097 3110Right-handed alpha
Helix 137
AP2
A
3113 3126Right-handed alpha
Helix 138
AP3
A
3129 3134Right-handed alpha
Helix 139
AP4
A
3137 3146Right-handed alpha
Helix 140
AP5
A
3155 3159Right-handed alpha
Helix 141
AP6
A
3169 3182Right-handed alpha
Helix 142
AP7
A
3183 3196Right-handed alpha
Helix 143
AP8
A
3204 3208Right-handed 310
Helix 144
AP9
A
3246 3261Right-handed alpha
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There are 9 sheets in PDB entry 9DNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
111 112parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
190 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
239 241anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1030 1031first strand
Strand 2
A
1041 1042anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1541 1542first strand
Strand 2
A
1584 1585anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2911 2915first strand
Strand 2
A
2941 2945parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2976 2979first strand
Strand 2
A
2982 2988anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3069 3074first strand
Strand 2
A
3077 3082anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3160 3163first strand
Strand 2
A
3217 3221parallel
Strand 3
A
3238 3241parallel
Strand 4
A
3231 3233anti-parallel
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