Analysis of interatomic Contacts of Structural Units in PDB entry:
9DO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DO0 entry

There are 2 chains in PDB entry 9DO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 79GLN 810
B
 ILE 79GLN 810
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 9DO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 114Right-handed alpha
Helix 2
AA2
A
114 157Right-handed alpha
Helix 3
AA3
A
168 173Right-handed alpha
Helix 4
AA4
A
192 197Right-handed alpha
Helix 5
AA5
A
203 232Right-handed alpha
Helix 6
AA6
A
233 237Right-handed 310
Helix 7
AA7
A
240 249Right-handed alpha
Helix 8
AA8
A
258 276Right-handed alpha
Helix 9
AA9
A
284 298Right-handed alpha
Helix 10
AB1
A
300 305Right-handed alpha
Helix 11
AB2
A
306 327Right-handed alpha
Helix 12
AB3
A
328 339Right-handed alpha
Helix 13
AB4
A
345 366Right-handed alpha
Helix 14
AB5
A
389 419Right-handed alpha
Helix 15
AB6
A
420 425Right-handed 310
Helix 16
AB7
A
426 443Right-handed alpha
Helix 17
AB8
A
445 450Right-handed alpha
Helix 18
AB9
A
451 461Right-handed alpha
Helix 19
AC1
A
469 473Right-handed 310
Helix 20
AC2
A
494 518Right-handed alpha
Helix 21
AC3
A
526 552Right-handed alpha
Helix 22
AC4
A
555 562Right-handed alpha
Helix 23
AC5
A
570 588Right-handed alpha
Helix 24
AC6
A
590 602Right-handed alpha
Helix 25
AC7
A
603 605Right-handed 310
Helix 26
AC8
A
606 624Right-handed alpha
Helix 27
AC9
A
628 638Right-handed alpha
Helix 28
AD1
A
653 657Right-handed 310
Helix 29
AD2
A
677 687Right-handed alpha
Helix 30
AD3
A
709 723Right-handed alpha
Helix 31
AD4
A
767 779Right-handed alpha
Helix 32
AD5
A
797 808Right-handed alpha
Helix 33
AD6
B
92 114Right-handed alpha
Helix 34
AD7
B
114 158Right-handed alpha
Helix 35
AD8
B
168 173Right-handed alpha
Helix 36
AD9
B
192 197Right-handed alpha
Helix 37
AE1
B
203 232Right-handed alpha
Helix 38
AE2
B
233 237Right-handed 310
Helix 39
AE3
B
240 249Right-handed alpha
Helix 40
AE4
B
258 276Right-handed alpha
Helix 41
AE5
B
284 298Right-handed alpha
Helix 42
AE6
B
300 305Right-handed alpha
Helix 43
AE7
B
306 327Right-handed alpha
Helix 44
AE8
B
328 339Right-handed alpha
Helix 45
AE9
B
345 366Right-handed alpha
Helix 46
AF1
B
389 419Right-handed alpha
Helix 47
AF2
B
420 425Right-handed 310
Helix 48
AF3
B
426 443Right-handed alpha
Helix 49
AF4
B
445 450Right-handed alpha
Helix 50
AF5
B
451 461Right-handed alpha
Helix 51
AF6
B
469 473Right-handed 310
Helix 52
AF7
B
494 518Right-handed alpha
Helix 53
AF8
B
526 552Right-handed alpha
Helix 54
AF9
B
555 562Right-handed alpha
Helix 55
AG1
B
570 588Right-handed alpha
Helix 56
AG2
B
590 602Right-handed alpha
Helix 57
AG3
B
603 605Right-handed 310
Helix 58
AG4
B
606 624Right-handed alpha
Helix 59
AG5
B
628 638Right-handed alpha
Helix 60
AG6
B
653 657Right-handed 310
Helix 61
AG7
B
677 687Right-handed alpha
Helix 62
AG8
B
709 723Right-handed alpha
Helix 63
AG9
B
767 779Right-handed alpha
Helix 64
AH1
B
797 808Right-handed alpha
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There are 8 sheets in PDB entry 9DO0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
190 191anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 671first strand
Strand 2
A
691 695parallel
Strand 3
A
703 708anti-parallel
Strand 4
A
755 756anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
675 676first strand
Strand 2
A
731 733anti-parallel
Strand 3
A
749 750parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
761 763first strand
Strand 2
A
782 787parallel
Strand 3
A
790 796anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
190 191anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
670 671first strand
Strand 2
B
691 695parallel
Strand 3
B
703 708anti-parallel
Strand 4
B
755 756anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
675 676first strand
Strand 2
B
731 733anti-parallel
Strand 3
B
749 750parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
761 763first strand
Strand 2
B
782 787parallel
Strand 3
B
790 796anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il