Analysis of interatomic Contacts of Structural Units in PDB entry:
9DO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DO4 entry

There is 1 chain in PDB entry 9DO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 0TYR 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9DO4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
0 15Right-handed alpha
Helix 2
AA2
B
43 47Right-handed 310
Helix 3
AA3
B
49 53Right-handed 310
Helix 4
AA4
B
82 86Right-handed 310
Helix 5
AA5
B
89 91Right-handed 310
Helix 6
AA6
B
124 135Right-handed alpha
Helix 7
AA7
B
136 138Right-handed 310
Helix 8
AA8
B
139 152Right-handed alpha
Helix 9
AA9
B
191 198Right-handed alpha
Helix 10
AB1
B
201 205Right-handed 310
Helix 11
AB2
B
214 222Right-handed alpha
Helix 12
AB3
B
243 251Right-handed alpha
Helix 13
AB4
B
258 268Right-handed alpha
Helix 14
AB5
B
270 278Right-handed alpha
Helix 15
AB6
B
281 312Right-handed alpha
Helix 16
AB7
B
319 332Right-handed alpha
Helix 17
AB8
B
342 347Right-handed alpha
Helix 18
AB9
B
353 370Right-handed alpha
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There are 3 sheets in PDB entry 9DO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 25first strand
Strand 2
B
31 37anti-parallel
Strand 3
B
57 61anti-parallel
Strand 4
B
64 70anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
93 98anti-parallel
Strand 3
B
228 233anti-parallel
Strand 4
B
238 242anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 118first strand
Strand 2
B
103 110anti-parallel
Strand 3
B
154 161anti-parallel
Strand 4
B
175 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il