Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DOC entry

There is 1 chain in PDB entry 9DOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 9SER 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9DOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
28 44Right-handed alpha
Helix 4
AA4
A
56 61Right-handed alpha
Helix 5
AA5
A
64 72Right-handed alpha
Helix 6
AA6
A
75 89Right-handed alpha
Helix 7
AA7
A
103 108Right-handed 310
Helix 8
AA8
A
109 124Right-handed alpha
Helix 9
AA9
A
149 162Right-handed alpha
Helix 10
AB1
A
170 186Right-handed alpha
Helix 11
AB2
A
187 190Right-handed 310
Helix 12
AB3
A
205 220Right-handed alpha
Helix 13
AB4
A
233 241Right-handed alpha
Helix 14
AB5
A
243 245Right-handed 310
Helix 15
AB6
A
252 266Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9DOC.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
129 136anti-parallel
Strand 3
A
94 101parallel
Strand 4
A
192 198parallel
Strand 5
A
223 228parallel
Strand 6
A
247 249parallel
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