Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DOF entry

There are 6 chains in PDB entry 9DOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 495
B	MET 1	ALA 495
C	MET 1	ALA 495
D	PHE 1	THR 166
E	PHE 1	THR 166
F	PHE 1	THR 166

There are 37 helices in PDB entry 9DOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	216	Right-handed alpha
Helix 2	AA2	A	256	265	Right-handed alpha
Helix 3	AA3	A	271	275	Right-handed 310
Helix 4	AA4	A	396	415	Right-handed alpha
Helix 5	AA5	A	426	447	Right-handed alpha
Helix 6	AA6	A	452	469	Right-handed alpha
Helix 7	AA7	A	472	495	Right-handed alpha
Helix 8	AA8	B	82	87	Right-handed alpha
Helix 9	AA9	B	147	151	Right-handed 310
Helix 10	AB1	B	165	169	Right-handed 310
Helix 11	AB2	B	210	216	Right-handed alpha
Helix 12	AB3	B	256	265	Right-handed alpha
Helix 13	AB4	B	273	275	Right-handed 310
Helix 14	AB5	B	396	415	Right-handed alpha
Helix 15	AB6	B	426	440	Right-handed alpha
Helix 16	AB7	B	440	446	Right-handed alpha
Helix 17	AB8	B	452	469	Right-handed alpha
Helix 18	AB9	B	472	495	Right-handed alpha
Helix 19	AC1	C	131	133	Right-handed 310
Helix 20	AC2	C	210	216	Right-handed alpha
Helix 21	AC3	C	233	237	Right-handed 310
Helix 22	AC4	C	256	265	Right-handed alpha
Helix 23	AC5	C	271	275	Right-handed 310
Helix 24	AC6	C	396	415	Right-handed alpha
Helix 25	AC7	C	427	446	Right-handed alpha
Helix 26	AC8	C	452	469	Right-handed alpha
Helix 27	AC9	C	472	494	Right-handed alpha
Helix 28	AD1	D	112	130	Right-handed alpha
Helix 29	AD2	D	130	145	Right-handed alpha
Helix 30	AD3	D	147	166	Right-handed alpha
Helix 31	AD4	E	110	130	Right-handed alpha
Helix 32	AD5	E	130	145	Right-handed alpha
Helix 33	AD6	E	147	166	Right-handed alpha
Helix 34	AD7	F	15	19	Right-handed 310
Helix 35	AD8	F	108	130	Right-handed alpha
Helix 36	AD9	F	130	145	Right-handed alpha
Helix 37	AE1	F	147	166	Right-handed alpha

There are 33 sheets in PDB entry 9DOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	29	33	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	160	164	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	25	first strand
Strand 2	A	283	288	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	126	129	anti-parallel
Strand 3	A	197	201	anti-parallel
Strand 4	A	204	208	anti-parallel
Strand 5	A	268	270	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	220	222	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	72	first strand
Strand 2	A	109	121	anti-parallel
Strand 3	A	90	99	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	175	first strand
Strand 2	A	179	183	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	250	251	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	A	333	334	parallel
Strand 3	A	357	358	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	310	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	A	364	370	anti-parallel
Strand 4	A	350	351	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	340	first strand
Strand 2	A	374	380	anti-parallel
Strand 3	A	387	393	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	29	35	parallel
Strand 3	B	38	50	anti-parallel
Strand 4	B	135	143	anti-parallel
Strand 5	B	160	164	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	25	first strand
Strand 2	B	283	288	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	126	129	anti-parallel
Strand 3	B	196	201	anti-parallel
Strand 4	B	204	209	anti-parallel
Strand 5	B	268	271	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	73	first strand
Strand 2	B	109	121	anti-parallel
Strand 3	B	90	99	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	175	first strand
Strand 2	B	179	183	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	250	252	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	320	325	anti-parallel
Strand 3	B	313	314	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	320	325	anti-parallel
Strand 3	B	365	370	anti-parallel
Strand 4	B	350	351	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	340	first strand
Strand 2	B	375	380	anti-parallel
Strand 3	B	387	392	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	31	33	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	135	143	anti-parallel
Strand 5	C	160	164	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	283	288	anti-parallel
Strand 3	C	179	186	anti-parallel
Strand 4	C	170	175	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	54	60	anti-parallel
Strand 3	C	124	129	anti-parallel
Strand 4	C	196	201	anti-parallel
Strand 5	C	204	209	anti-parallel
Strand 6	C	268	270	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	109	120	anti-parallel
Strand 3	C	70	72	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	109	120	anti-parallel
Strand 3	C	90	99	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	365	370	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	357	358	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	340	first strand
Strand 2	C	376	380	anti-parallel
Strand 3	C	387	391	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	9	13	anti-parallel
Strand 3	D	73	77	parallel
Strand 4	D	49	53	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	30	36	anti-parallel
Strand 3	D	66	68	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	9	13	anti-parallel
Strand 3	E	74	80	parallel
Strand 4	E	43	50	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	30	36	anti-parallel
Strand 3	E	66	68	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	9	14	anti-parallel
Strand 3	F	74	78	parallel
Strand 4	F	48	49	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	F	33	36	anti-parallel
Strand 3	F	66	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOF