Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DOK entry

There are 4 chains in PDB entry 9DOK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ARG 240
A	ALA 2	ARG 240
G	MET 1	ALA 354
F	MET 1	ALA 365

There are 49 helices in PDB entry 9DOK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	41	51	Right-handed alpha
Helix 2	AA2	B	71	79	Right-handed alpha
Helix 3	AA3	B	94	104	Right-handed alpha
Helix 4	AA4	B	110	125	Right-handed alpha
Helix 5	AA5	B	127	131	Right-handed 310
Helix 6	AA6	B	134	138	Right-handed 310
Helix 7	AA7	B	139	154	Right-handed alpha
Helix 8	AA8	B	171	187	Right-handed alpha
Helix 9	AA9	B	196	204	Right-handed alpha
Helix 10	AB1	B	220	226	Right-handed alpha
Helix 11	AB2	B	227	234	Right-handed alpha
Helix 12	AB3	A	42	51	Right-handed alpha
Helix 13	AB4	A	71	78	Right-handed alpha
Helix 14	AB5	A	94	104	Right-handed alpha
Helix 15	AB6	A	110	125	Right-handed alpha
Helix 16	AB7	A	134	138	Right-handed 310
Helix 17	AB8	A	139	154	Right-handed alpha
Helix 18	AB9	A	171	187	Right-handed alpha
Helix 19	AC1	A	196	204	Right-handed alpha
Helix 20	AC2	A	220	226	Right-handed alpha
Helix 21	AC3	A	227	234	Right-handed alpha
Helix 22	AC4	G	2	36	Right-handed alpha
Helix 23	AC5	G	37	39	Right-handed 310
Helix 24	AC6	G	44	55	Right-handed alpha
Helix 25	AC7	G	55	63	Right-handed alpha
Helix 26	AC8	G	63	82	Right-handed alpha
Helix 27	AC9	G	83	91	Right-handed alpha
Helix 28	AD1	G	94	120	Right-handed alpha
Helix 29	AD2	G	120	136	Right-handed alpha
Helix 30	AD3	G	230	238	Right-handed alpha
Helix 31	AD4	G	240	244	Right-handed 310
Helix 32	AD5	G	245	260	Right-handed alpha
Helix 33	AD6	G	263	275	Right-handed alpha
Helix 34	AD7	G	275	293	Right-handed alpha
Helix 35	AD8	G	299	328	Right-handed alpha
Helix 36	AD9	G	333	353	Right-handed alpha
Helix 37	AE1	F	2	41	Right-handed alpha
Helix 38	AE2	F	55	82	Right-handed alpha
Helix 39	AE3	F	85	90	Right-handed alpha
Helix 40	AE4	F	95	120	Right-handed alpha
Helix 41	AE5	F	120	135	Right-handed alpha
Helix 42	AE6	F	139	144	Right-handed 310
Helix 43	AE7	F	241	248	Right-handed alpha
Helix 44	AE8	F	256	261	Right-handed alpha
Helix 45	AE9	F	264	275	Right-handed alpha
Helix 46	AF1	F	276	292	Right-handed alpha
Helix 47	AF2	F	304	327	Right-handed alpha
Helix 48	AF3	F	336	352	Right-handed alpha
Helix 49	AF4	F	352	365	Right-handed alpha

There are 9 sheets in PDB entry 9DOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	27	first strand
Strand 2	B	3	11	anti-parallel
Strand 3	B	57	62	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	191	193	parallel
Strand 3	B	32	35	parallel
Strand 4	B	206	211	parallel
Strand 5	B	214	219	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	26	first strand
Strand 2	A	4	11	anti-parallel
Strand 3	A	57	62	anti-parallel
Strand 4	A	65	66	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	191	193	parallel
Strand 3	A	32	35	parallel
Strand 4	A	206	211	parallel
Strand 5	A	214	219	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	151	first strand
Strand 2	G	155	159	anti-parallel
Strand 3	G	167	176	anti-parallel
Strand 4	G	161	163	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	151	first strand
Strand 2	G	155	159	anti-parallel
Strand 3	G	167	176	anti-parallel
Strand 4	G	182	190	anti-parallel
Strand 5	G	203	207	anti-parallel
Strand 6	G	216	220	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	193	194	first strand
Strand 2	G	197	199	anti-parallel
Strand 3	G	224	225	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	151	first strand
Strand 2	F	157	161	anti-parallel
Strand 3	F	174	178	anti-parallel
Strand 4	F	191	193	anti-parallel
Strand 5	F	217	218	anti-parallel
Strand 6	F	229	230	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	200	first strand
Strand 2	F	208	212	anti-parallel
Strand 3	F	237	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DOK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOK