Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DOQ entry

There are 5 chains in PDB entry 9DOQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	ARG 240
A	ALA 2	ARG 240
G	MET 1	ALA 354
F	MET 1	SER 362
C	THR 47	LEU 182

There are 49 helices in PDB entry 9DOQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	42	51	Right-handed alpha
Helix 2	AA2	B	71	79	Right-handed alpha
Helix 3	AA3	B	94	104	Right-handed alpha
Helix 4	AA4	B	110	125	Right-handed alpha
Helix 5	AA5	B	127	131	Right-handed 310
Helix 6	AA6	B	139	154	Right-handed alpha
Helix 7	AA7	B	169	187	Right-handed alpha
Helix 8	AA8	B	198	204	Right-handed alpha
Helix 9	AA9	B	220	227	Right-handed alpha
Helix 10	AB1	B	228	234	Right-handed alpha
Helix 11	AB2	A	41	51	Right-handed alpha
Helix 12	AB3	A	71	79	Right-handed alpha
Helix 13	AB4	A	94	106	Right-handed alpha
Helix 14	AB5	A	110	125	Right-handed alpha
Helix 15	AB6	A	127	131	Right-handed 310
Helix 16	AB7	A	134	138	Right-handed 310
Helix 17	AB8	A	139	154	Right-handed alpha
Helix 18	AB9	A	169	186	Right-handed alpha
Helix 19	AC1	A	196	204	Right-handed alpha
Helix 20	AC2	A	220	227	Right-handed alpha
Helix 21	AC3	A	227	234	Right-handed alpha
Helix 22	AC4	G	2	36	Right-handed alpha
Helix 23	AC5	G	37	39	Right-handed 310
Helix 24	AC6	G	44	82	Right-handed alpha
Helix 25	AC7	G	84	91	Right-handed alpha
Helix 26	AC8	G	94	137	Right-handed alpha
Helix 27	AC9	G	230	238	Right-handed alpha
Helix 28	AD1	G	240	244	Right-handed 310
Helix 29	AD2	G	245	259	Right-handed alpha
Helix 30	AD3	G	263	275	Right-handed alpha
Helix 31	AD4	G	275	293	Right-handed alpha
Helix 32	AD5	G	299	329	Right-handed alpha
Helix 33	AD6	G	331	353	Right-handed alpha
Helix 34	AD7	F	2	40	Right-handed alpha
Helix 35	AD8	F	44	46	Right-handed 310
Helix 36	AD9	F	47	82	Right-handed alpha
Helix 37	AE1	F	83	90	Right-handed alpha
Helix 38	AE2	F	94	120	Right-handed alpha
Helix 39	AE3	F	120	133	Right-handed alpha
Helix 40	AE4	F	135	143	Right-handed alpha
Helix 41	AE5	F	249	254	Right-handed alpha
Helix 42	AE6	F	255	260	Right-handed alpha
Helix 43	AE7	F	264	275	Right-handed alpha
Helix 44	AE8	F	275	289	Right-handed alpha
Helix 45	AE9	F	290	293	Right-handed 310
Helix 46	AF1	F	304	327	Right-handed alpha
Helix 47	AF2	F	336	352	Right-handed alpha
Helix 48	AF3	F	352	361	Right-handed alpha
Helix 49	AF4	C	113	117	Right-handed 310

There are 11 sheets in PDB entry 9DOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	27	first strand
Strand 2	B	3	11	anti-parallel
Strand 3	B	57	62	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	189	192	parallel
Strand 3	B	31	35	parallel
Strand 4	B	207	211	parallel
Strand 5	B	214	217	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	27	first strand
Strand 2	A	3	12	anti-parallel
Strand 3	A	57	62	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	189	193	parallel
Strand 3	A	32	35	parallel
Strand 4	A	206	210	parallel
Strand 5	A	215	219	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	152	first strand
Strand 2	G	155	163	anti-parallel
Strand 3	G	167	175	anti-parallel
Strand 4	G	184	193	anti-parallel
Strand 5	G	206	207	anti-parallel
Strand 6	G	216	217	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	152	first strand
Strand 2	G	155	163	anti-parallel
Strand 3	G	167	175	anti-parallel
Strand 4	G	184	193	anti-parallel
Strand 5	G	198	203	anti-parallel
Strand 6	G	224	225	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	161	first strand
Strand 2	F	174	179	anti-parallel
Strand 3	F	190	195	anti-parallel
Strand 4	F	215	220	anti-parallel
Strand 5	F	227	232	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	201	first strand
Strand 2	F	209	212	anti-parallel
Strand 3	F	235	238	anti-parallel
Strand 4	C	48	60	anti-parallel
Strand 5	C	66	78	anti-parallel
Strand 6	C	84	87	anti-parallel
Strand 7	C	107	110	anti-parallel
Strand 8	C	118	120	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	125	126	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	157	160	anti-parallel
Strand 3	C	166	168	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	172	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DOQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOQ