Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DOR entry

There are 5 chains in PDB entry 9DOR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	ARG 240
A	ALA 2	ARG 240
G	MET 1	ALA 354
F	MET 1	SER 362
C	THR 47	LYS 176

There are 43 helices in PDB entry 9DOR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	41	51	Right-handed alpha
Helix 2	AA2	B	71	79	Right-handed alpha
Helix 3	AA3	B	94	104	Right-handed alpha
Helix 4	AA4	B	110	125	Right-handed alpha
Helix 5	AA5	B	139	154	Right-handed alpha
Helix 6	AA6	B	169	187	Right-handed alpha
Helix 7	AA7	B	196	204	Right-handed alpha
Helix 8	AA8	B	220	227	Right-handed alpha
Helix 9	AA9	B	227	234	Right-handed alpha
Helix 10	AB1	A	41	51	Right-handed alpha
Helix 11	AB2	A	71	79	Right-handed alpha
Helix 12	AB3	A	94	106	Right-handed alpha
Helix 13	AB4	A	110	125	Right-handed alpha
Helix 14	AB5	A	139	154	Right-handed alpha
Helix 15	AB6	A	172	186	Right-handed alpha
Helix 16	AB7	A	196	204	Right-handed alpha
Helix 17	AB8	A	221	227	Right-handed alpha
Helix 18	AB9	A	227	234	Right-handed alpha
Helix 19	AC1	G	2	36	Right-handed alpha
Helix 20	AC2	G	37	39	Right-handed 310
Helix 21	AC3	G	44	82	Right-handed alpha
Helix 22	AC4	G	84	91	Right-handed alpha
Helix 23	AC5	G	94	138	Right-handed alpha
Helix 24	AC6	G	230	239	Right-handed alpha
Helix 25	AC7	G	245	260	Right-handed alpha
Helix 26	AC8	G	263	275	Right-handed alpha
Helix 27	AC9	G	275	292	Right-handed alpha
Helix 28	AD1	G	299	328	Right-handed alpha
Helix 29	AD2	G	331	353	Right-handed alpha
Helix 30	AD3	F	2	41	Right-handed alpha
Helix 31	AD4	F	44	46	Right-handed 310
Helix 32	AD5	F	47	82	Right-handed alpha
Helix 33	AD6	F	83	90	Right-handed alpha
Helix 34	AD7	F	94	119	Right-handed alpha
Helix 35	AD8	F	119	136	Right-handed alpha
Helix 36	AD9	F	183	188	Right-handed alpha
Helix 37	AE1	F	241	248	Right-handed alpha
Helix 38	AE2	F	264	275	Right-handed alpha
Helix 39	AE3	F	275	292	Right-handed alpha
Helix 40	AE4	F	304	327	Right-handed alpha
Helix 41	AE5	F	336	352	Right-handed alpha
Helix 42	AE6	F	352	361	Right-handed alpha
Helix 43	AE7	C	112	115	Right-handed 310

There are 10 sheets in PDB entry 9DOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	27	first strand
Strand 2	B	3	12	anti-parallel
Strand 3	B	57	62	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	158	161	parallel
Strand 3	B	189	192	parallel
Strand 4	B	31	35	parallel
Strand 5	B	206	211	parallel
Strand 6	B	214	219	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	27	first strand
Strand 2	A	3	12	anti-parallel
Strand 3	A	57	62	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	158	162	parallel
Strand 3	A	189	193	parallel
Strand 4	A	31	35	parallel
Strand 5	A	206	211	parallel
Strand 6	A	214	220	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	152	first strand
Strand 2	G	155	161	anti-parallel
Strand 3	G	168	175	anti-parallel
Strand 4	G	184	193	anti-parallel
Strand 5	G	198	203	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	152	first strand
Strand 2	G	155	161	anti-parallel
Strand 3	G	168	175	anti-parallel
Strand 4	G	184	193	anti-parallel
Strand 5	G	206	207	anti-parallel
Strand 6	G	216	217	anti-parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	157	161	anti-parallel
Strand 3	F	174	178	anti-parallel
Strand 4	F	190	195	anti-parallel
Strand 5	F	215	220	anti-parallel
Strand 6	F	227	232	anti-parallel
Strand 7	C	56	60	anti-parallel
Strand 8	C	66	72	anti-parallel
Strand 9	C	89	93	anti-parallel
Strand 10	C	101	104	anti-parallel
Strand 11	C	117	125	anti-parallel
Strand 12	C	107	110	anti-parallel
Strand 13	C	84	85	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	157	161	anti-parallel
Strand 3	F	174	178	anti-parallel
Strand 4	F	190	195	anti-parallel
Strand 5	F	215	220	anti-parallel
Strand 6	F	227	232	anti-parallel
Strand 7	C	56	60	anti-parallel
Strand 8	C	66	72	anti-parallel
Strand 9	C	89	93	anti-parallel
Strand 10	C	101	104	anti-parallel
Strand 11	C	117	125	anti-parallel
Strand 12	C	137	145	anti-parallel
Strand 13	C	150	152	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	202	first strand
Strand 2	F	208	211	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	53	first strand
Strand 2	C	74	77	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DOR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOR