Analysis of interatomic Contacts of Structural Units in PDB entry:
9DOU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DOU entry

There are 5 chains in PDB entry 9DOU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 220MET 1390
B
 C 24 G 49
P
 G 12 T 24
R
 A 259 A 333
T
 C 22 C 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 9DOU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
241 254Right-handed alpha
Helix 2
AA2
A
271 282Right-handed alpha
Helix 3
AA3
A
306 317Right-handed alpha
Helix 4
AA4
A
321 330Right-handed alpha
Helix 5
AA5
A
551 573Right-handed alpha
Helix 6
AA6
A
573 584Right-handed alpha
Helix 7
AA7
A
595 606Right-handed alpha
Helix 8
AA8
A
624 629Right-handed 310
Helix 9
AA9
A
633 644Right-handed alpha
Helix 10
AB1
A
656 664Right-handed alpha
Helix 11
AB2
A
667 681Right-handed alpha
Helix 12
AB3
A
684 687Right-handed 310
Helix 13
AB4
A
706 708Right-handed 310
Helix 14
AB5
A
717 735Right-handed alpha
Helix 15
AB6
A
748 767Right-handed alpha
Helix 16
AB7
A
780 785Right-handed alpha
Helix 17
AB8
A
786 797Right-handed alpha
Helix 18
AB9
A
800 811Right-handed alpha
Helix 19
AC1
A
841 861Right-handed alpha
Helix 20
AC2
A
886 905Right-handed alpha
Helix 21
AC3
A
909 912Right-handed 310
Helix 22
AC4
A
966 980Right-handed alpha
Helix 23
AC5
A
984 995Right-handed alpha
Helix 24
AC6
A
996 999Right-handed 310
Helix 25
AC7
A
1000 1007Right-handed alpha
Helix 26
AC8
A
1010 1029Right-handed alpha
Helix 27
AC9
A
1037 1042Right-handed alpha
Helix 28
AD1
A
1043 1047Right-handed 310
Helix 29
AD2
A
1053 1071Right-handed alpha
Helix 30
AD3
A
1082 1097Right-handed alpha
Helix 31
AD4
A
1100 1104Right-handed 310
Helix 32
AD5
A
1140 1151Right-handed alpha
Helix 33
AD6
A
1158 1163Right-handed 310
Helix 34
AD7
A
1169 1174Right-handed alpha
Helix 35
AD8
A
1179 1192Right-handed alpha
Helix 36
AD9
A
1196 1202Right-handed alpha
Helix 37
AE1
A
1221 1228Right-handed alpha
Helix 38
AE2
A
1229 1231Right-handed 310
Helix 39
AE3
A
1232 1254Right-handed alpha
Helix 40
AE4
A
1298 1310Right-handed alpha
Helix 41
AE5
A
1311 1313Right-handed 310
Helix 42
AE6
A
1314 1323Right-handed alpha
Helix 43
AE7
A
1343 1351Right-handed alpha
Helix 44
AE8
A
1354 1386Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 9DOU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
258 261parallel
Strand 3
A
268 269anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 715first strand
Strand 2
A
689 696anti-parallel
Strand 3
A
815 820parallel
Strand 4
A
824 830anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
873 876first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
771 777anti-parallel
Strand 4
A
914 920anti-parallel
Strand 5
A
925 927anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
873 876first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
771 777anti-parallel
Strand 4
A
914 920anti-parallel
Strand 5
A
941 942parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
864 866first strand
Strand 2
A
869 871anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
934 935first strand
Strand 2
A
938 939anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
949 951first strand
Strand 2
A
954 957anti-parallel
Strand 3
A
961 962anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1257 1260first strand
Strand 2
A
1276 1280anti-parallel
Strand 3
A
1283 1292anti-parallel
Strand 4
A
1326 1335parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1264 1265first strand
Strand 2
A
1271 1272anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il