Analysis of interatomic Contacts of Structural Units in PDB entry:
9DP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DP4 entry

There are 8 chains in PDB entry 9DP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 43LEU 318
B
 ALA 43LEU 318
D
 C 2 C 11
E
 G 1 C 10
F
 G 1 C 21
G
 C 2 C 11
H
 G 1 C 10
I
 G 1 C 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9DP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 76Right-handed alpha
Helix 2
AA2
A
79 88Right-handed alpha
Helix 3
AA3
A
105 111Right-handed 310
Helix 4
AA4
A
181 201Right-handed alpha
Helix 5
AA5
A
216 220Right-handed 310
Helix 6
AA6
A
233 247Right-handed alpha
Helix 7
AA7
A
252 257Right-handed alpha
Helix 8
AA8
A
289 293Right-handed 310
Helix 9
AA9
B
71 78Right-handed alpha
Helix 10
AB1
B
80 88Right-handed alpha
Helix 11
AB2
B
105 110Right-handed 310
Helix 12
AB3
B
181 201Right-handed alpha
Helix 13
AB4
B
216 220Right-handed 310
Helix 14
AB5
B
233 247Right-handed alpha
Helix 15
AB6
B
252 257Right-handed alpha
Helix 16
AB7
B
269 273Right-handed 310
Helix 17
AB8
B
289 293Right-handed 310
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There are 4 sheets in PDB entry 9DP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
131 135anti-parallel
Strand 3
A
91 95anti-parallel
Strand 4
A
62 68parallel
Strand 5
A
312 316anti-parallel
Strand 6
A
295 300anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
157 161anti-parallel
Strand 3
A
166 171anti-parallel
Strand 4
A
205 210parallel
Strand 5
A
283 287anti-parallel
Strand 6
A
250 251anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
131 135anti-parallel
Strand 3
B
91 95anti-parallel
Strand 4
B
62 68parallel
Strand 5
B
312 316anti-parallel
Strand 6
B
295 300anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
157 161anti-parallel
Strand 3
B
166 171anti-parallel
Strand 4
B
205 210parallel
Strand 5
B
283 287anti-parallel
Strand 6
B
250 251anti-parallel
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