Analysis of interatomic Contacts of Structural Units in PDB entry:
9DP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DP5 entry

There are 2 chains in PDB entry 9DP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 497TYR 863
B
 ASP 494TYR 863
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9DP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
501 520Right-handed alpha
Helix 2
AA2
A
574 596Right-handed alpha
Helix 3
AA3
A
629 633Right-handed 310
Helix 4
AA4
A
655 658Right-handed 310
Helix 5
AA5
A
684 696Right-handed alpha
Helix 6
AA6
A
698 703Right-handed alpha
Helix 7
AA7
A
721 730Right-handed alpha
Helix 8
AA8
A
798 813Right-handed alpha
Helix 9
AA9
A
821 828Right-handed alpha
Helix 10
AB1
A
829 846Right-handed alpha
Helix 11
AB2
A
855 859Right-handed 310
Helix 12
AB3
B
501 520Right-handed alpha
Helix 13
AB4
B
574 596Right-handed alpha
Helix 14
AB5
B
629 633Right-handed 310
Helix 15
AB6
B
684 696Right-handed alpha
Helix 16
AB7
B
698 703Right-handed alpha
Helix 17
AB8
B
721 730Right-handed alpha
Helix 18
AB9
B
798 813Right-handed alpha
Helix 19
AC1
B
821 829Right-handed alpha
Helix 20
AC2
B
829 846Right-handed alpha
Helix 21
AC3
B
855 859Right-handed 310
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There are 6 sheets in PDB entry 9DP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
749 751first strand
Strand 2
A
713 718parallel
Strand 3
A
617 625parallel
Strand 4
A
529 536anti-parallel
Strand 5
A
545 553anti-parallel
Strand 6
A
768 773anti-parallel
Strand 7
A
780 783anti-parallel
Strand 8
A
788 789anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 605first strand
Strand 2
A
611 613anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 653first strand
Strand 2
A
660 662anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
749 751first strand
Strand 2
B
713 718parallel
Strand 3
B
617 625parallel
Strand 4
B
529 536anti-parallel
Strand 5
B
545 553anti-parallel
Strand 6
B
768 773anti-parallel
Strand 7
B
780 783anti-parallel
Strand 8
B
788 789anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
603 605first strand
Strand 2
B
611 613anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
651 653first strand
Strand 2
B
660 662anti-parallel
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