Analysis of interatomic Contacts of Structural Units in PDB entry:
9DP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DP6 entry

There are 2 chains in PDB entry 9DP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 2ASN 84
A
 PRO 22THR 956
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9DP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 20Right-handed alpha
Helix 2
AA2
B
23 27Right-handed 310
Helix 3
AA3
B
40 55Right-handed alpha
Helix 4
AA4
B
60 65Right-handed alpha
Helix 5
AA5
B
69 84Right-handed alpha
Helix 6
AA6
A
24 33Right-handed alpha
Helix 7
AA7
A
33 52Right-handed alpha
Helix 8
AA8
A
54 62Right-handed alpha
Helix 9
AA9
A
71 84Right-handed alpha
Helix 10
AB1
A
104 121Right-handed alpha
Helix 11
AB2
A
137 142Right-handed 310
Helix 12
AB3
A
161 177Right-handed alpha
Helix 13
AB4
A
190 226Right-handed alpha
Helix 14
AB5
A
227 255Right-handed alpha
Helix 15
AB6
A
261 293Right-handed alpha
Helix 16
AB7
A
296 325Right-handed alpha
Helix 17
AB8
A
326 329Right-handed 310
Helix 18
AB9
A
331 365Right-handed alpha
Helix 19
AC1
A
378 391Right-handed alpha
Helix 20
AC2
A
391 405Right-handed alpha
Helix 21
AC3
A
406 410Right-handed 310
Helix 22
AC4
A
427 438Right-handed alpha
Helix 23
AC5
A
441 446Right-handed alpha
Helix 24
AC6
A
460 477Right-handed alpha
Helix 25
AC7
A
694 700Right-handed 310
Helix 26
AC8
A
702 711Right-handed alpha
Helix 27
AC9
A
730 749Right-handed alpha
Helix 28
AD1
A
751 755Right-handed 310
Helix 29
AD2
A
763 798Right-handed alpha
Helix 30
AD3
A
799 825Right-handed alpha
Helix 31
AD4
A
836 864Right-handed alpha
Helix 32
AD5
A
865 867Right-handed 310
Helix 33
AD6
A
870 879Right-handed alpha
Helix 34
AD7
A
880 896Right-handed alpha
Helix 35
AD8
A
897 900Right-handed 310
Helix 36
AD9
A
902 922Right-handed alpha
Helix 37
AE1
A
926 936Right-handed alpha
Helix 38
AE2
A
937 941Right-handed 310
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There are 2 sheets in PDB entry 9DP6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
148 155anti-parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
184 189anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 484first strand
Strand 2
A
717 724anti-parallel
Strand 3
A
448 453anti-parallel
Strand 4
A
757 762anti-parallel
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