Analysis of interatomic Contacts of Structural Units in PDB entry:
9DPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DPB entry

There are 3 chains in PDB entry 9DPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 72ASP 577
B
ASP 72GLU 576
C
G 1 G 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9DPB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
75 90Right-handed alpha
Helix 2
AA2
A
104 113Right-handed alpha
Helix 3
AA3
A
161 163Right-handed 310
Helix 4
AA4
A
165 174Right-handed alpha
Helix 5
AA5
A
224 229Right-handed alpha
Helix 6
AA6
A
229 237Right-handed alpha
Helix 7
AA7
A
238 261Right-handed alpha
Helix 8
AA8
A
300 311Right-handed alpha
Helix 9
AA9
A
346 367Right-handed alpha
Helix 10
AB1
A
395 405Right-handed alpha
Helix 11
AB2
A
410 415Right-handed 310
Helix 12
AB3
A
416 430Right-handed alpha
Helix 13
AB4
A
439 452Right-handed alpha
Helix 14
AB5
A
453 456Right-handed 310
Helix 15
AB6
A
504 521Right-handed alpha
Helix 16
AB7
A
530 538Right-handed alpha
Helix 17
AB8
A
551 559Right-handed alpha
Helix 18
AB9
A
563 567Right-handed 310
Helix 19
AC1
B
73 90Right-handed alpha
Helix 20
AC2
B
104 112Right-handed alpha
Helix 21
AC3
B
165 174Right-handed alpha
Helix 22
AC4
B
222 229Right-handed alpha
Helix 23
AC5
B
229 237Right-handed alpha
Helix 24
AC6
B
238 261Right-handed alpha
Helix 25
AC7
B
300 311Right-handed alpha
Helix 26
AC8
B
348 367Right-handed alpha
Helix 27
AC9
B
397 405Right-handed alpha
Helix 28
AD1
B
416 430Right-handed alpha
Helix 29
AD2
B
439 452Right-handed alpha
Helix 30
AD3
B
468 470Right-handed 310
Helix 31
AD4
B
504 522Right-handed alpha
Helix 32
AD5
B
530 539Right-handed alpha
Helix 33
AD6
B
551 559Right-handed alpha
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There are 10 sheets in PDB entry 9DPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 137first strand
Strand 2
A
142 149anti-parallel
Strand 3
A
152 159anti-parallel
Strand 4
A
196 207parallel
Strand 5
A
181 190anti-parallel
Strand 6
A
126 137anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
264 265first strand
Strand 2
A
314 322parallel
Strand 3
A
334 343anti-parallel
Strand 4
A
544 550anti-parallel
Strand 5
A
493 500anti-parallel
Strand 6
A
485 490anti-parallel
Strand 7
A
460 462anti-parallel
Strand 8
A
392 394parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
271 272first strand
Strand 2
A
292 296anti-parallel
Strand 3
A
284 287anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
370 373first strand
Strand 2
A
383 386anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
465 466first strand
Strand 2
A
482 483anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
156 159first strand
Strand 2
B
142 148anti-parallel
Strand 3
B
126 137anti-parallel
Strand 4
B
181 190anti-parallel
Strand 5
B
196 207anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
264 265first strand
Strand 2
B
314 322parallel
Strand 3
B
334 343anti-parallel
Strand 4
B
544 550anti-parallel
Strand 5
B
493 500anti-parallel
Strand 6
B
482 490anti-parallel
Strand 7
B
460 462anti-parallel
Strand 8
B
392 394parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
264 265first strand
Strand 2
B
314 322parallel
Strand 3
B
334 343anti-parallel
Strand 4
B
544 550anti-parallel
Strand 5
B
493 500anti-parallel
Strand 6
B
482 490anti-parallel
Strand 7
B
464 466anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
271 272first strand
Strand 2
B
295 296anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
370 373first strand
Strand 2
B
383 386anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il