Analysis of interatomic Contacts of Structural Units in PDB entry:
9DPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DPB entry

There are 3 chains in PDB entry 9DPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 72	ASP 577
B	ASP 72	GLU 576
C	G 1	G 73

There are 33 helices in PDB entry 9DPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	90	Right-handed alpha
Helix 2	AA2	A	104	113	Right-handed alpha
Helix 3	AA3	A	161	163	Right-handed 310
Helix 4	AA4	A	165	174	Right-handed alpha
Helix 5	AA5	A	224	229	Right-handed alpha
Helix 6	AA6	A	229	237	Right-handed alpha
Helix 7	AA7	A	238	261	Right-handed alpha
Helix 8	AA8	A	300	311	Right-handed alpha
Helix 9	AA9	A	346	367	Right-handed alpha
Helix 10	AB1	A	395	405	Right-handed alpha
Helix 11	AB2	A	410	415	Right-handed 310
Helix 12	AB3	A	416	430	Right-handed alpha
Helix 13	AB4	A	439	452	Right-handed alpha
Helix 14	AB5	A	453	456	Right-handed 310
Helix 15	AB6	A	504	521	Right-handed alpha
Helix 16	AB7	A	530	538	Right-handed alpha
Helix 17	AB8	A	551	559	Right-handed alpha
Helix 18	AB9	A	563	567	Right-handed 310
Helix 19	AC1	B	73	90	Right-handed alpha
Helix 20	AC2	B	104	112	Right-handed alpha
Helix 21	AC3	B	165	174	Right-handed alpha
Helix 22	AC4	B	222	229	Right-handed alpha
Helix 23	AC5	B	229	237	Right-handed alpha
Helix 24	AC6	B	238	261	Right-handed alpha
Helix 25	AC7	B	300	311	Right-handed alpha
Helix 26	AC8	B	348	367	Right-handed alpha
Helix 27	AC9	B	397	405	Right-handed alpha
Helix 28	AD1	B	416	430	Right-handed alpha
Helix 29	AD2	B	439	452	Right-handed alpha
Helix 30	AD3	B	468	470	Right-handed 310
Helix 31	AD4	B	504	522	Right-handed alpha
Helix 32	AD5	B	530	539	Right-handed alpha
Helix 33	AD6	B	551	559	Right-handed alpha

There are 10 sheets in PDB entry 9DPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	137	first strand
Strand 2	A	142	149	anti-parallel
Strand 3	A	152	159	anti-parallel
Strand 4	A	196	207	parallel
Strand 5	A	181	190	anti-parallel
Strand 6	A	126	137	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	314	322	parallel
Strand 3	A	334	343	anti-parallel
Strand 4	A	544	550	anti-parallel
Strand 5	A	493	500	anti-parallel
Strand 6	A	485	490	anti-parallel
Strand 7	A	460	462	anti-parallel
Strand 8	A	392	394	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	292	296	anti-parallel
Strand 3	A	284	287	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	373	first strand
Strand 2	A	383	386	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	466	first strand
Strand 2	A	482	483	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	142	148	anti-parallel
Strand 3	B	126	137	anti-parallel
Strand 4	B	181	190	anti-parallel
Strand 5	B	196	207	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	314	322	parallel
Strand 3	B	334	343	anti-parallel
Strand 4	B	544	550	anti-parallel
Strand 5	B	493	500	anti-parallel
Strand 6	B	482	490	anti-parallel
Strand 7	B	460	462	anti-parallel
Strand 8	B	392	394	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	314	322	parallel
Strand 3	B	334	343	anti-parallel
Strand 4	B	544	550	anti-parallel
Strand 5	B	493	500	anti-parallel
Strand 6	B	482	490	anti-parallel
Strand 7	B	464	466	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	295	296	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	373	first strand
Strand 2	B	383	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DPB