Analysis of interatomic Contacts of Structural Units in PDB entry:
9DPC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DPC entry

There are 6 chains in PDB entry 9DPC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 83	ASN 469
B	VAL 83	ASP 468
C	VAL 83	ASP 468
D	VAL 83	ASN 469
H	VAL 2	SER 113
L	ASP 1	ILE 106

There are 15 helices in PDB entry 9DPC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	110	Right-handed alpha
Helix 2	AA2	A	142	146	Right-handed 310
Helix 3	AA3	A	409	414	Right-handed alpha
Helix 4	AA4	B	104	110	Right-handed alpha
Helix 5	AA5	B	142	146	Right-handed 310
Helix 6	AA6	B	409	414	Right-handed alpha
Helix 7	AA7	C	104	109	Right-handed alpha
Helix 8	AA8	C	142	146	Right-handed 310
Helix 9	AA9	C	409	414	Right-handed alpha
Helix 10	AB1	D	104	109	Right-handed alpha
Helix 11	AB2	D	142	146	Right-handed 310
Helix 12	AB3	D	409	414	Right-handed alpha
Helix 13	AB4	H	61	64	Right-handed 310
Helix 14	AB5	H	83	87	Right-handed 310
Helix 15	AB6	L	79	83	Right-handed 310

There are 34 sheets in PDB entry 9DPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	103	first strand
Strand 2	A	438	448	anti-parallel
Strand 3	A	419	429	anti-parallel
Strand 4	A	403	408	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	125	first strand
Strand 2	A	128	139	anti-parallel
Strand 3	A	157	162	anti-parallel
Strand 4	A	173	176	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	190	196	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	211	217	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	232	234	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	252	259	anti-parallel
Strand 4	A	262	268	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	284	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	302	306	anti-parallel
Strand 4	A	313	316	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	356	361	anti-parallel
Strand 3	A	369	376	anti-parallel
Strand 4	A	389	399	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	103	first strand
Strand 2	B	438	448	anti-parallel
Strand 3	B	419	429	anti-parallel
Strand 4	B	403	408	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	124	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	173	176	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	190	196	anti-parallel
Strand 3	B	203	208	anti-parallel
Strand 4	B	211	217	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	232	234	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	262	268	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	284	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	302	306	anti-parallel
Strand 4	B	312	316	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	369	376	anti-parallel
Strand 4	B	389	399	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	103	first strand
Strand 2	C	438	448	anti-parallel
Strand 3	C	419	429	anti-parallel
Strand 4	C	403	408	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	121	124	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	157	162	anti-parallel
Strand 4	C	173	177	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	185	first strand
Strand 2	C	190	196	anti-parallel
Strand 3	C	203	207	anti-parallel
Strand 4	C	212	217	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	233	234	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	252	259	anti-parallel
Strand 4	C	262	268	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	284	first strand
Strand 2	C	287	291	anti-parallel
Strand 3	C	302	306	anti-parallel
Strand 4	C	313	316	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	356	361	anti-parallel
Strand 3	C	369	376	anti-parallel
Strand 4	C	389	399	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	103	first strand
Strand 2	D	438	448	anti-parallel
Strand 3	D	419	429	anti-parallel
Strand 4	D	403	408	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	121	124	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	173	177	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	185	first strand
Strand 2	D	190	196	anti-parallel
Strand 3	D	203	208	anti-parallel
Strand 4	D	211	217	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	237	244	anti-parallel
Strand 3	D	232	234	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	237	244	anti-parallel
Strand 3	D	252	259	anti-parallel
Strand 4	D	262	269	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	284	first strand
Strand 2	D	287	291	anti-parallel
Strand 3	D	302	306	anti-parallel
Strand 4	D	312	316	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	353	first strand
Strand 2	D	356	361	anti-parallel
Strand 3	D	369	376	anti-parallel
Strand 4	D	389	399	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DPC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DPC