Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DQ5 entry

There are 8 chains in PDB entry 9DQ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	PRO 217
L	ASP 1	GLU 218
C	GLU -1	ILE 115
I	GLU 1	PRO 217
M	ASP 1	GLU 218
D	GLU -1	ILE 115
J	GLU 1	SER 219
N	ASP 1	GLU 218

There are 23 helices in PDB entry 9DQ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	62	65	Right-handed 310
Helix 2	AA2	H	74	76	Right-handed 310
Helix 3	AA3	H	160	162	Right-handed 310
Helix 4	AA4	H	189	193	Right-handed 310
Helix 5	AA5	H	204	208	Right-handed 310
Helix 6	AA6	L	84	88	Right-handed 310
Helix 7	AA7	L	126	131	Right-handed alpha
Helix 8	AA8	L	188	192	Right-handed alpha
Helix 9	AA9	I	62	65	Right-handed 310
Helix 10	AB1	I	160	162	Right-handed 310
Helix 11	AB2	I	191	196	Right-handed alpha
Helix 12	AB3	I	205	208	Right-handed 310
Helix 13	AB4	M	84	88	Right-handed 310
Helix 14	AB5	M	126	131	Right-handed alpha
Helix 15	AB6	M	188	192	Right-handed alpha
Helix 16	AB7	D	83	87	Right-handed 310
Helix 17	AB8	J	62	65	Right-handed 310
Helix 18	AB9	J	87	91	Right-handed 310
Helix 19	AC1	J	160	162	Right-handed 310
Helix 20	AC2	J	205	208	Right-handed 310
Helix 21	AC3	N	84	88	Right-handed 310
Helix 22	AC4	N	126	131	Right-handed alpha
Helix 23	AC5	N	188	192	Right-handed alpha

There are 38 sheets in PDB entry 9DQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	111	114	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	111	114	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	106	107	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	140	149	anti-parallel
Strand 3	H	185	188	anti-parallel
Strand 4	H	167	168	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	140	149	anti-parallel
Strand 3	H	180	182	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	199	203	anti-parallel
Strand 3	H	211	214	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	69	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	108	112	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	51	54	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	134	144	anti-parallel
Strand 3	L	178	187	anti-parallel
Strand 4	L	164	168	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	150	155	first strand
Strand 2	L	196	202	anti-parallel
Strand 3	L	210	215	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	110	113	parallel
Strand 3	C	88	98	anti-parallel
Strand 4	C	31	37	anti-parallel
Strand 5	C	49	52	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	74	80	anti-parallel
Strand 3	C	66	71	anti-parallel
Strand 4	C	58	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	79	83	anti-parallel
Strand 4	I	68	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	111	115	parallel
Strand 3	I	93	98	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	111	115	parallel
Strand 3	I	93	98	anti-parallel
Strand 4	I	106	107	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	128	first strand
Strand 2	I	139	149	anti-parallel
Strand 3	I	180	189	anti-parallel
Strand 4	I	167	169	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	128	first strand
Strand 2	I	139	149	anti-parallel
Strand 3	I	180	189	anti-parallel
Strand 4	I	173	174	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	158	first strand
Strand 2	I	199	204	anti-parallel
Strand 3	I	209	214	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	75	80	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	107	112	parallel
Strand 3	M	89	95	anti-parallel
Strand 4	M	38	43	anti-parallel
Strand 5	M	49	54	anti-parallel
Strand 6	M	58	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	107	112	parallel
Strand 3	M	89	95	anti-parallel
Strand 4	M	102	103	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	119	123	first strand
Strand 2	M	134	144	anti-parallel
Strand 3	M	178	187	anti-parallel
Strand 4	M	164	168	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	158	159	first strand
Strand 2	M	150	155	anti-parallel
Strand 3	M	196	202	anti-parallel
Strand 4	M	210	215	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	2	first strand
Strand 2	D	105	106	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	110	113	parallel
Strand 3	D	89	96	anti-parallel
Strand 4	D	32	37	anti-parallel
Strand 5	D	49	52	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	75	79	anti-parallel
Strand 3	D	66	70	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	111	115	parallel
Strand 3	J	92	98	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	111	115	parallel
Strand 3	J	92	98	anti-parallel
Strand 4	J	106	107	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	23	first strand
Strand 2	J	78	84	anti-parallel
Strand 3	J	68	73	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	124	128	first strand
Strand 2	J	139	149	anti-parallel
Strand 3	J	180	189	anti-parallel
Strand 4	J	167	169	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	124	128	first strand
Strand 2	J	139	149	anti-parallel
Strand 3	J	180	189	anti-parallel
Strand 4	J	173	174	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	158	first strand
Strand 2	J	198	203	anti-parallel
Strand 3	J	210	215	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	75	80	anti-parallel
Strand 4	N	67	68	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	75	80	anti-parallel
Strand 4	N	71	72	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	107	112	parallel
Strand 3	N	89	95	anti-parallel
Strand 4	N	38	43	anti-parallel
Strand 5	N	49	54	anti-parallel
Strand 6	N	58	59	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	107	112	parallel
Strand 3	N	89	95	anti-parallel
Strand 4	N	102	103	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	119	123	first strand
Strand 2	N	134	144	anti-parallel
Strand 3	N	178	187	anti-parallel
Strand 4	N	164	168	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	158	159	first strand
Strand 2	N	150	155	anti-parallel
Strand 3	N	196	202	anti-parallel
Strand 4	N	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DQ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQ5