Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DQ7 entry

There are 4 chains in PDB entry 9DQ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	MET 1	MET 314
A	MET 1	MET 314
B	MET 1	MET 314
C	MET 1	MET 314

There are 59 helices in PDB entry 9DQ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	13	26	Right-handed alpha
Helix 2	AA2	P	39	52	Right-handed alpha
Helix 3	AA3	P	53	57	Right-handed 310
Helix 4	AA4	P	67	74	Right-handed 310
Helix 5	AA5	P	91	93	Right-handed 310
Helix 6	AA6	P	94	112	Right-handed alpha
Helix 7	AA7	P	124	137	Right-handed alpha
Helix 8	AA8	P	139	141	Right-handed 310
Helix 9	AA9	P	148	164	Right-handed alpha
Helix 10	AB1	P	166	168	Right-handed 310
Helix 11	AB2	P	186	188	Right-handed 310
Helix 12	AB3	P	196	202	Right-handed alpha
Helix 13	AB4	P	206	229	Right-handed alpha
Helix 14	AB5	P	232	248	Right-handed alpha
Helix 15	AB6	P	262	266	Right-handed 310
Helix 16	AB7	P	293	313	Right-handed alpha
Helix 17	AB8	A	13	26	Right-handed alpha
Helix 18	AB9	A	39	52	Right-handed alpha
Helix 19	AC1	A	53	57	Right-handed 310
Helix 20	AC2	A	67	72	Right-handed 310
Helix 21	AC3	A	90	112	Right-handed alpha
Helix 22	AC4	A	124	137	Right-handed alpha
Helix 23	AC5	A	139	141	Right-handed 310
Helix 24	AC6	A	148	164	Right-handed alpha
Helix 25	AC7	A	166	168	Right-handed 310
Helix 26	AC8	A	186	188	Right-handed 310
Helix 27	AC9	A	196	202	Right-handed alpha
Helix 28	AD1	A	206	229	Right-handed alpha
Helix 29	AD2	A	232	248	Right-handed alpha
Helix 30	AD3	A	293	314	Right-handed alpha
Helix 31	AD4	B	13	26	Right-handed alpha
Helix 32	AD5	B	39	52	Right-handed alpha
Helix 33	AD6	B	53	57	Right-handed 310
Helix 34	AD7	B	67	74	Right-handed 310
Helix 35	AD8	B	91	93	Right-handed 310
Helix 36	AD9	B	94	112	Right-handed alpha
Helix 37	AE1	B	124	137	Right-handed alpha
Helix 38	AE2	B	139	141	Right-handed 310
Helix 39	AE3	B	148	164	Right-handed alpha
Helix 40	AE4	B	166	168	Right-handed 310
Helix 41	AE5	B	186	188	Right-handed 310
Helix 42	AE6	B	196	202	Right-handed alpha
Helix 43	AE7	B	206	229	Right-handed alpha
Helix 44	AE8	B	232	248	Right-handed alpha
Helix 45	AE9	B	293	313	Right-handed alpha
Helix 46	AF1	C	13	26	Right-handed alpha
Helix 47	AF2	C	39	52	Right-handed alpha
Helix 48	AF3	C	53	57	Right-handed 310
Helix 49	AF4	C	67	74	Right-handed 310
Helix 50	AF5	C	91	112	Right-handed alpha
Helix 51	AF6	C	124	137	Right-handed alpha
Helix 52	AF7	C	139	141	Right-handed 310
Helix 53	AF8	C	148	164	Right-handed alpha
Helix 54	AF9	C	166	168	Right-handed 310
Helix 55	AG1	C	186	188	Right-handed 310
Helix 56	AG2	C	196	202	Right-handed alpha
Helix 57	AG3	C	206	229	Right-handed alpha
Helix 58	AG4	C	232	249	Right-handed alpha
Helix 59	AG5	C	293	314	Right-handed alpha

There are 16 sheets in PDB entry 9DQ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	62	65	first strand
Strand 2	P	32	36	parallel
Strand 3	P	6	10	parallel
Strand 4	P	76	79	parallel
Strand 5	P	117	120	parallel
Strand 6	P	143	145	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	170	171	first strand
Strand 2	P	190	191	anti-parallel
Strand 3	P	194	195	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	174	175	first strand
Strand 2	P	183	184	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	252	260	first strand
Strand 2	P	271	280	anti-parallel
Strand 3	P	283	287	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	32	36	parallel
Strand 3	A	6	10	parallel
Strand 4	A	76	79	parallel
Strand 5	A	117	120	parallel
Strand 6	A	143	145	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	190	191	anti-parallel
Strand 3	A	194	195	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	183	184	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	260	first strand
Strand 2	A	271	280	anti-parallel
Strand 3	A	283	287	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	65	first strand
Strand 2	B	32	36	parallel
Strand 3	B	6	10	parallel
Strand 4	B	76	79	parallel
Strand 5	B	117	120	parallel
Strand 6	B	143	145	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	190	191	anti-parallel
Strand 3	B	194	195	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	183	184	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	260	first strand
Strand 2	B	271	280	anti-parallel
Strand 3	B	283	287	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	65	first strand
Strand 2	C	32	36	parallel
Strand 3	C	6	10	parallel
Strand 4	C	76	79	parallel
Strand 5	C	117	120	parallel
Strand 6	C	143	145	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	190	191	anti-parallel
Strand 3	C	194	195	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	183	184	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	261	first strand
Strand 2	C	269	280	anti-parallel
Strand 3	C	283	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DQ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQ7