Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DQF entry

There is 1 chain in PDB entry 9DQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2LYS 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9DQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
21 24Right-handed 310
Helix 3
AA3
A
32 43Right-handed alpha
Helix 4
AA4
A
56 64Right-handed alpha
Helix 5
AA5
A
65 67Right-handed 310
Helix 6
AA6
A
77 84Right-handed alpha
Helix 7
AA7
A
85 90Right-handed alpha
Helix 8
AA8
A
107 121Right-handed alpha
Helix 9
AA9
A
154 158Right-handed 310
Helix 10
AB1
A
161 165Right-handed 310
Helix 11
AB2
A
177 185Right-handed alpha
Helix 12
AB3
A
198 207Right-handed alpha
Helix 13
AB4
A
219 224Right-handed 310
Helix 14
AB5
A
228 250Right-handed alpha
Helix 15
AB6
A
256 260Right-handed 310
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There are 7 sheets in PDB entry 9DQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
47 52parallel
Strand 3
A
3 8parallel
Strand 4
A
95 100parallel
Strand 5
A
167 176anti-parallel
Strand 6
A
125 131anti-parallel
Strand 7
A
212 216parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
30 31anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
149 153anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
273 274parallel
Strand 3
A
291 292parallel
Strand 4
A
308 309parallel
Strand 5
A
324 325parallel
Strand 6
A
342 345parallel
Strand 7
A
359 362parallel
Strand 8
A
376 377parallel
Strand 9
A
401 402parallel
Strand 10
A
419 420parallel
Strand 11
A
435 436parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
279 281parallel
Strand 3
A
297 299parallel
Strand 4
A
313 315parallel
Strand 5
A
330 331parallel
Strand 6
A
348 354parallel
Strand 7
A
335 337parallel
Strand 8
A
318 319parallel
Strand 9
A
302 303parallel
Strand 10
A
284 286parallel
Strand 11
A
266 268parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
279 281parallel
Strand 3
A
297 299parallel
Strand 4
A
313 315parallel
Strand 5
A
330 331parallel
Strand 6
A
348 354parallel
Strand 7
A
365 371parallel
Strand 8
A
394 396parallel
Strand 9
A
412 414parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
407 409parallel
Strand 3
A
425 426parallel
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