Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DQM entry

There are 2 chains in PDB entry 9DQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4GLU 426
B
 GLU 4GLU 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9DQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 34Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
52 59Right-handed alpha
Helix 4
AA4
A
64 69Right-handed alpha
Helix 5
AA5
A
70 74Right-handed 310
Helix 6
AA6
A
89 103Right-handed alpha
Helix 7
AA7
A
113 124Right-handed alpha
Helix 8
AA8
A
155 177Right-handed alpha
Helix 9
AA9
A
191 202Right-handed alpha
Helix 10
AB1
A
208 212Right-handed 310
Helix 11
AB2
A
218 236Right-handed alpha
Helix 12
AB3
A
248 253Right-handed 310
Helix 13
AB4
A
254 262Right-handed alpha
Helix 14
AB5
A
276 280Right-handed 310
Helix 15
AB6
A
281 295Right-handed alpha
Helix 16
AB7
A
296 298Right-handed 310
Helix 17
AB8
A
307 311Right-handed 310
Helix 18
AB9
A
316 336Right-handed alpha
Helix 19
AC1
A
375 384Right-handed alpha
Helix 20
AC2
A
389 394Right-handed alpha
Helix 21
AC3
A
395 406Right-handed alpha
Helix 22
AC4
A
409 418Right-handed alpha
Helix 23
AC5
A
419 423Right-handed 310
Helix 24
AC6
B
19 33Right-handed alpha
Helix 25
AC7
B
52 59Right-handed alpha
Helix 26
AC8
B
64 69Right-handed alpha
Helix 27
AC9
B
70 74Right-handed 310
Helix 28
AD1
B
89 103Right-handed alpha
Helix 29
AD2
B
113 125Right-handed alpha
Helix 30
AD3
B
155 177Right-handed alpha
Helix 31
AD4
B
191 202Right-handed alpha
Helix 32
AD5
B
208 212Right-handed 310
Helix 33
AD6
B
218 236Right-handed alpha
Helix 34
AD7
B
248 253Right-handed 310
Helix 35
AD8
B
254 262Right-handed alpha
Helix 36
AD9
B
270 274Right-handed 310
Helix 37
AE1
B
276 280Right-handed 310
Helix 38
AE2
B
281 295Right-handed alpha
Helix 39
AE3
B
296 298Right-handed 310
Helix 40
AE4
B
307 311Right-handed 310
Helix 41
AE5
B
316 336Right-handed alpha
Helix 42
AE6
B
356 358Right-handed 310
Helix 43
AE7
B
375 384Right-handed alpha
Helix 44
AE8
B
389 395Right-handed alpha
Helix 45
AE9
B
395 406Right-handed alpha
Helix 46
AF1
B
409 418Right-handed alpha
Helix 47
AF2
B
419 423Right-handed 310
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There are 5 sheets in PDB entry 9DQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
37 41anti-parallel
Strand 3
A
7 12parallel
Strand 4
A
105 112parallel
Strand 5
A
134 138parallel
Strand 6
A
341 346parallel
Strand 7
A
349 354anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
241 246parallel
Strand 3
A
180 185parallel
Strand 4
A
301 306parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
365 366anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
37 41anti-parallel
Strand 3
B
7 12parallel
Strand 4
B
105 112parallel
Strand 5
B
133 138parallel
Strand 6
B
341 346parallel
Strand 7
B
349 354anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
241 246parallel
Strand 3
B
180 185parallel
Strand 4
B
301 306parallel
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