Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DQP entry

There are 2 chains in PDB entry 9DQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2GLN 244
B
 THR 3GLU 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9DQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
25 38Right-handed alpha
Helix 3
AA3
A
39 42Right-handed 310
Helix 4
AA4
A
78 86Right-handed alpha
Helix 5
AA5
A
100 106Right-handed alpha
Helix 6
AA6
A
106 118Right-handed alpha
Helix 7
AA7
A
124 130Right-handed 310
Helix 8
AA8
B
4 13Right-handed alpha
Helix 9
AA9
B
18 22Right-handed 310
Helix 10
AB1
B
25 38Right-handed alpha
Helix 11
AB2
B
39 42Right-handed 310
Helix 12
AB3
B
100 106Right-handed alpha
Helix 13
AB4
B
107 118Right-handed alpha
Helix 14
AB5
B
124 130Right-handed 310
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There are 8 sheets in PDB entry 9DQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
200 204anti-parallel
Strand 3
A
163 172anti-parallel
Strand 4
A
224 235anti-parallel
Strand 5
A
132 143anti-parallel
Strand 6
A
54 65anti-parallel
Strand 7
A
70 73anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
200 204anti-parallel
Strand 3
A
163 172anti-parallel
Strand 4
A
224 235anti-parallel
Strand 5
A
132 143anti-parallel
Strand 6
A
54 65anti-parallel
Strand 7
A
97 98parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
215 217anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
179 182anti-parallel
Strand 3
A
209 212anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
200 204anti-parallel
Strand 3
B
163 172anti-parallel
Strand 4
B
224 235anti-parallel
Strand 5
B
132 143anti-parallel
Strand 6
B
53 65anti-parallel
Strand 7
B
43 44anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
200 204anti-parallel
Strand 3
B
163 172anti-parallel
Strand 4
B
224 235anti-parallel
Strand 5
B
132 143anti-parallel
Strand 6
B
53 65anti-parallel
Strand 7
B
70 73anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
215 217anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 192first strand
Strand 2
B
179 182anti-parallel
Strand 3
B
209 212anti-parallel
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