Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DQS entry

There are 5 chains in PDB entry 9DQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 783
B
 MET 731LEU 783
C
 SER 0LEU 783
D
 MET 731LEU 783
E
 MET 731LEU 783
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9DQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
755 758Right-handed 310
Helix 2
AA2
A
776 778Right-handed 310
Helix 3
AA3
B
755 758Right-handed 310
Helix 4
AA4
B
766 768Right-handed 310
Helix 5
AA5
B
776 778Right-handed 310
Helix 6
AA6
C
755 759Right-handed 310
Helix 7
AA7
C
766 768Right-handed 310
Helix 8
AA8
C
774 778Right-handed 310
Helix 9
AA9
D
755 758Right-handed 310
Helix 10
AB1
D
776 778Right-handed 310
Helix 11
AB2
E
755 759Right-handed 310
Helix 12
AB3
E
766 768Right-handed 310
Helix 13
AB4
E
774 778Right-handed 310
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There are 5 sheets in PDB entry 9DQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 774first strand
Strand 2
A
760 764anti-parallel
Strand 3
A
745 753anti-parallel
Strand 4
A
738 741anti-parallel
Strand 5
A
780 782anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 774first strand
Strand 2
A
760 764anti-parallel
Strand 3
A
745 753anti-parallel
Strand 4
D
770 774anti-parallel
Strand 5
D
760 764anti-parallel
Strand 6
D
745 753anti-parallel
Strand 7
D
738 741anti-parallel
Strand 8
D
780 782anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
770 774first strand
Strand 2
B
760 764anti-parallel
Strand 3
B
745 753anti-parallel
Strand 4
B
738 741anti-parallel
Strand 5
B
780 782anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
770 773first strand
Strand 2
C
760 764anti-parallel
Strand 3
C
745 753anti-parallel
Strand 4
C
738 741anti-parallel
Strand 5
C
780 782anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
770 773first strand
Strand 2
C
760 764anti-parallel
Strand 3
C
745 753anti-parallel
Strand 4
E
770 773anti-parallel
Strand 5
E
760 764anti-parallel
Strand 6
E
745 753anti-parallel
Strand 7
E
738 741anti-parallel
Strand 8
E
780 783anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il