Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DQW entry

There are 2 chains in PDB entry 9DQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 197
A
 LEU 199HIS 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9DQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
58 65Right-handed alpha
Helix 4
AA4
A
78 87Right-handed alpha
Helix 5
AA5
A
93 102Right-handed alpha
Helix 6
AA6
A
114 129Right-handed alpha
Helix 7
AA7
A
142 147Right-handed 310
Helix 8
AA8
A
159 165Right-handed alpha
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
190 200Right-handed alpha
Helix 11
AB2
A
201 203Right-handed 310
Helix 12
AB3
A
214 218Right-handed 310
Helix 13
AB4
A
259 261Right-handed 310
Helix 14
AB5
A
265 282Right-handed alpha
Helix 15
AB6
A
285 296Right-handed alpha
Helix 16
AB7
A
322 331Right-handed alpha
Helix 17
AB8
A
352 359Right-handed 310
Helix 18
AB9
A
372 378Right-handed alpha
Helix 19
AC1
A
379 382Right-handed 310
Helix 20
AC2
A
389 398Right-handed alpha
Helix 21
AC3
A
399 401Right-handed 310
Helix 22
AC4
A
421 438Right-handed alpha
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There are 4 sheets in PDB entry 9DQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
32 35parallel
Strand 3
A
8 11parallel
Strand 4
A
67 70parallel
Strand 5
A
90 92parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
153 157parallel
Strand 3
A
106 110parallel
Strand 4
A
173 176parallel
Strand 5
A
207 211parallel
Strand 6
A
227 230parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 242first strand
Strand 2
A
245 250anti-parallel
Strand 3
A
254 257anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 309first strand
Strand 2
A
312 316anti-parallel
Strand 3
A
406 409parallel
Strand 4
A
339 344parallel
Strand 5
A
364 369parallel
Strand 6
A
384 386parallel
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