Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DQY entry

There are 9 chains in PDB entry 9DQY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	LEU 434
B	SER 1	ALA 401
C	PHE 1	LEU 434
D	SER 1	ALA 401
E	PHE 1	LEU 434
F	SER 1	ALA 401
G	GLN 1	ASP 96
H	GLN 1	ASP 96
I	GLN 1	ASP 96

There are 34 helices in PDB entry 9DQY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	111	116	Right-handed 310
Helix 2	AA2	A	238	246	Right-handed alpha
Helix 3	AA3	A	255	259	Right-handed 310
Helix 4	AA4	A	397	402	Right-handed alpha
Helix 5	AA5	A	403	434	Right-handed alpha
Helix 6	AA6	B	176	178	Right-handed 310
Helix 7	AA7	B	222	224	Right-handed 310
Helix 8	AA8	B	351	363	Right-handed alpha
Helix 9	AA9	B	363	398	Right-handed alpha
Helix 10	AB1	C	111	116	Right-handed 310
Helix 11	AB2	C	238	246	Right-handed alpha
Helix 12	AB3	C	255	259	Right-handed 310
Helix 13	AB4	C	403	433	Right-handed alpha
Helix 14	AB5	D	81	83	Right-handed 310
Helix 15	AB6	D	176	178	Right-handed 310
Helix 16	AB7	D	222	224	Right-handed 310
Helix 17	AB8	D	351	363	Right-handed alpha
Helix 18	AB9	D	363	398	Right-handed alpha
Helix 19	AC1	E	112	116	Right-handed 310
Helix 20	AC2	E	238	246	Right-handed alpha
Helix 21	AC3	E	255	259	Right-handed 310
Helix 22	AC4	E	406	434	Right-handed alpha
Helix 23	AC5	F	5	9	Right-handed 310
Helix 24	AC6	F	176	178	Right-handed 310
Helix 25	AC7	F	222	224	Right-handed 310
Helix 26	AC8	F	351	363	Right-handed alpha
Helix 27	AC9	F	363	398	Right-handed alpha
Helix 28	AD1	G	19	24	Right-handed alpha
Helix 29	AD2	G	26	33	Right-handed alpha
Helix 30	AD3	G	62	67	Right-handed alpha
Helix 31	AD4	H	19	23	Right-handed alpha
Helix 32	AD5	H	62	67	Right-handed alpha
Helix 33	AD6	I	19	23	Right-handed alpha
Helix 34	AD7	I	26	33	Right-handed alpha

There are 64 sheets in PDB entry 9DQY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	159	163	anti-parallel
Strand 4	A	153	156	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	29	48	anti-parallel
Strand 3	A	119	137	anti-parallel
Strand 4	A	176	180	anti-parallel
Strand 5	A	183	185	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	147	first strand
Strand 2	A	119	137	anti-parallel
Strand 3	A	29	48	anti-parallel
Strand 4	A	267	269	anti-parallel
Strand 5	A	260	262	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	100	106	anti-parallel
Strand 3	A	77	82	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	91	92	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	214	215	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	233	234	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	304	first strand
Strand 2	A	315	322	anti-parallel
Strand 3	A	349	358	anti-parallel
Strand 4	A	337	339	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	362	369	anti-parallel
Strand 4	A	372	379	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	326	330	anti-parallel
Strand 4	B	282	299	anti-parallel
Strand 5	B	275	279	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	326	330	anti-parallel
Strand 4	B	282	299	anti-parallel
Strand 5	B	307	320	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	253	258	parallel
Strand 3	B	162	169	anti-parallel
Strand 4	B	237	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	25	27	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	42	53	anti-parallel
Strand 3	B	59	67	anti-parallel
Strand 4	B	75	79	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	42	53	anti-parallel
Strand 3	B	92	104	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	108	115	anti-parallel
Strand 3	B	123	130	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	261	266	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	183	first strand
Strand 2	B	186	189	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	197	201	anti-parallel
Strand 3	B	226	230	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	8	first strand
Strand 2	C	275	281	anti-parallel
Strand 3	C	160	163	anti-parallel
Strand 4	C	153	154	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	C	27	48	anti-parallel
Strand 3	C	119	137	anti-parallel
Strand 4	C	176	180	anti-parallel
Strand 5	C	183	185	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	148	first strand
Strand 2	C	119	137	anti-parallel
Strand 3	C	27	48	anti-parallel
Strand 4	C	267	269	anti-parallel
Strand 5	C	260	262	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	100	106	anti-parallel
Strand 3	C	77	84	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	91	92	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	214	215	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	233	234	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	304	first strand
Strand 2	C	314	322	anti-parallel
Strand 3	C	349	358	anti-parallel
Strand 4	C	337	339	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	346	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	365	369	anti-parallel
Strand 4	C	372	376	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	D	336	340	anti-parallel
Strand 3	D	326	330	anti-parallel
Strand 4	D	293	299	anti-parallel
Strand 5	D	307	311	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	253	256	parallel
Strand 3	D	165	169	anti-parallel
Strand 4	D	237	238	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	25	27	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	35	first strand
Strand 2	D	42	47	anti-parallel
Strand 3	D	100	104	anti-parallel
Strand 4	D	92	97	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	53	first strand
Strand 2	D	59	67	anti-parallel
Strand 3	D	75	79	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	108	114	anti-parallel
Strand 3	D	123	130	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	155	first strand
Strand 2	D	261	266	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	183	first strand
Strand 2	D	186	189	anti-parallel
Strand 3	D	215	216	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	211	first strand
Strand 2	D	197	202	anti-parallel
Strand 3	D	226	230	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	276	first strand
Strand 2	D	283	287	anti-parallel
Strand 3	D	315	319	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	8	first strand
Strand 2	E	275	281	anti-parallel
Strand 3	E	161	163	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	19	first strand
Strand 2	E	27	48	anti-parallel
Strand 3	E	119	137	anti-parallel
Strand 4	E	176	180	anti-parallel
Strand 5	E	183	185	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	148	first strand
Strand 2	E	119	137	anti-parallel
Strand 3	E	27	48	anti-parallel
Strand 4	E	267	269	anti-parallel
Strand 5	E	260	262	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	100	110	anti-parallel
Strand 3	E	59	61	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	100	110	anti-parallel
Strand 3	E	77	84	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	91	92	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	203	204	first strand
Strand 2	E	214	215	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	221	first strand
Strand 2	E	233	234	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	299	304	first strand
Strand 2	E	315	320	anti-parallel
Strand 3	E	350	358	anti-parallel
Strand 4	E	337	339	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	307	first strand
Strand 2	E	376	381	parallel
Strand 3	E	362	369	anti-parallel
Strand 4	E	326	333	anti-parallel
Strand 5	E	343	346	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	307	first strand
Strand 2	E	376	381	parallel
Strand 3	E	362	369	anti-parallel
Strand 4	E	372	373	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	388	first strand
Strand 2	F	336	340	anti-parallel
Strand 3	F	326	330	anti-parallel
Strand 4	F	282	299	anti-parallel
Strand 5	F	275	279	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	388	first strand
Strand 2	F	336	340	anti-parallel
Strand 3	F	326	330	anti-parallel
Strand 4	F	282	299	anti-parallel
Strand 5	F	307	320	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	3	first strand
Strand 2	F	253	258	parallel
Strand 3	F	162	169	anti-parallel
Strand 4	F	237	238	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	16	first strand
Strand 2	F	25	27	anti-parallel

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There are 7 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	35	first strand
Strand 2	F	42	47	anti-parallel
Strand 3	F	100	104	anti-parallel
Strand 4	F	90	97	anti-parallel
Strand 5	F	83	86	anti-parallel
Strand 6	F	108	115	anti-parallel
Strand 7	F	122	130	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	53	first strand
Strand 2	F	59	67	anti-parallel
Strand 3	F	75	79	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	155	first strand
Strand 2	F	261	266	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	180	182	first strand
Strand 2	F	187	189	anti-parallel
Strand 3	F	215	217	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	211	first strand
Strand 2	F	197	202	anti-parallel
Strand 3	F	226	230	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	6	first strand
Strand 2	G	86	94	parallel
Strand 3	G	76	81	anti-parallel
Strand 4	G	36	37	anti-parallel

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There are 3 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	18	first strand
Strand 2	G	54	57	anti-parallel
Strand 3	G	46	49	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	86	94	parallel
Strand 3	H	74	81	anti-parallel
Strand 4	H	36	37	anti-parallel

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There are 3 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	18	first strand
Strand 2	H	54	57	anti-parallel
Strand 3	H	46	48	anti-parallel

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There are 4 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	86	95	parallel
Strand 3	I	75	81	anti-parallel
Strand 4	I	36	37	anti-parallel

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There are 3 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	18	first strand
Strand 2	I	54	57	anti-parallel
Strand 3	I	46	48	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DQY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DQY