Analysis of interatomic Contacts of Structural Units in PDB entry:
9DR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DR0 entry

There are 2 chains in PDB entry 9DR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 234	LEU 565
B	VAL 230	LEU 565

There are 11 helices in PDB entry 9DR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	234	239	Right-handed 310
Helix 2	AA2	A	240	246	Right-handed alpha
Helix 3	AA3	A	365	369	Right-handed 310
Helix 4	AA4	A	435	439	Right-handed 310
Helix 5	AA5	A	465	469	Right-handed 310
Helix 6	AA6	A	487	497	Right-handed alpha
Helix 7	AA7	B	234	239	Right-handed 310
Helix 8	AA8	B	240	245	Right-handed alpha
Helix 9	AA9	B	365	369	Right-handed 310
Helix 10	AB1	B	435	439	Right-handed 310
Helix 11	AB2	B	487	497	Right-handed alpha

There are 8 sheets in PDB entry 9DR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	484	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	530	532	anti-parallel
Strand 4	A	518	524	anti-parallel
Strand 5	A	507	515	anti-parallel
Strand 6	A	546	556	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	259	262	anti-parallel
Strand 3	A	455	462	anti-parallel
Strand 4	A	530	532	anti-parallel
Strand 5	A	518	524	anti-parallel
Strand 6	A	563	564	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	370	378	anti-parallel
Strand 3	A	350	357	anti-parallel
Strand 4	A	421	422	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	370	378	anti-parallel
Strand 3	A	394	399	anti-parallel
Strand 4	A	309	315	anti-parallel
Strand 5	A	291	301	anti-parallel
Strand 6	A	409	416	anti-parallel
Strand 7	A	350	357	anti-parallel
Strand 8	A	421	422	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	484	first strand
Strand 2	B	455	462	anti-parallel
Strand 3	B	530	532	anti-parallel
Strand 4	B	518	524	anti-parallel
Strand 5	B	507	515	anti-parallel
Strand 6	B	546	556	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	542	first strand
Strand 2	B	259	262	anti-parallel
Strand 3	B	455	462	anti-parallel
Strand 4	B	530	532	anti-parallel
Strand 5	B	518	524	anti-parallel
Strand 6	B	563	564	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	370	378	anti-parallel
Strand 3	B	350	357	anti-parallel
Strand 4	B	421	422	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	370	378	anti-parallel
Strand 3	B	394	399	anti-parallel
Strand 4	B	309	315	anti-parallel
Strand 5	B	290	301	anti-parallel
Strand 6	B	409	417	anti-parallel
Strand 7	B	350	357	anti-parallel
Strand 8	B	421	422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DR0