Analysis of interatomic Contacts of Structural Units in PDB entry:
9DR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DR8 entry

There are 2 chains in PDB entry 9DR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3ASP 310
B
 SER 2ALA 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9DR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
27 49Right-handed alpha
Helix 3
AA3
A
51 68Right-handed alpha
Helix 4
AA4
A
70 78Right-handed alpha
Helix 5
AA5
A
79 95Right-handed alpha
Helix 6
AA6
A
206 216Right-handed alpha
Helix 7
AA7
A
258 262Right-handed 310
Helix 8
AA8
A
270 275Right-handed 310
Helix 9
AA9
B
8 19Right-handed alpha
Helix 10
AB1
B
27 49Right-handed alpha
Helix 11
AB2
B
51 68Right-handed alpha
Helix 12
AB3
B
70 78Right-handed alpha
Helix 13
AB4
B
79 96Right-handed alpha
Helix 14
AB5
B
206 216Right-handed alpha
Helix 15
AB6
B
258 262Right-handed 310
Helix 16
AB7
B
270 275Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 9DR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
307 308parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
179 183parallel
Strand 3
A
152 156anti-parallel
Strand 4
A
224 230anti-parallel
Strand 5
A
237 242anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
189 195parallel
Strand 3
A
133 142anti-parallel
Strand 4
A
281 285parallel
Strand 5
A
265 268anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
189 195parallel
Strand 3
A
133 142anti-parallel
Strand 4
A
288 290parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
220 221anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
307 308parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
179 183parallel
Strand 3
B
152 156anti-parallel
Strand 4
B
224 230anti-parallel
Strand 5
B
237 242anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
189 195parallel
Strand 3
B
133 142anti-parallel
Strand 4
B
281 285parallel
Strand 5
B
265 268anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
189 195parallel
Strand 3
B
133 142anti-parallel
Strand 4
B
288 290parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
220 221anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il