Analysis of interatomic Contacts of Structural Units in PDB entry:
9DRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DRD entry

There are 7 chains in PDB entry 9DRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -4	LYS 210
B	GLN 7	LYS 210
C	GLN 7	LYS 210
D	THR 5	LYS 210
E	GLY 8	LYS 210
F	GLY 8	LYS 210
G	GLN 7	VAL 68

There are 48 helices in PDB entry 9DRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	14	Right-handed 310
Helix 2	AA2	A	80	86	Right-handed 310
Helix 3	AA3	A	104	118	Right-handed alpha
Helix 4	AA4	A	149	153	Right-handed 310
Helix 5	AA5	A	173	182	Right-handed alpha
Helix 6	AA6	A	187	209	Right-handed alpha
Helix 7	AA7	B	12	14	Right-handed 310
Helix 8	AA8	B	80	86	Right-handed 310
Helix 9	AA9	B	104	118	Right-handed alpha
Helix 10	AB1	B	149	153	Right-handed 310
Helix 11	AB2	B	173	182	Right-handed alpha
Helix 12	AB3	B	187	210	Right-handed alpha
Helix 13	AB4	C	12	14	Right-handed 310
Helix 14	AB5	C	80	86	Right-handed 310
Helix 15	AB6	C	104	118	Right-handed alpha
Helix 16	AB7	C	149	153	Right-handed 310
Helix 17	AB8	C	173	182	Right-handed alpha
Helix 18	AB9	C	187	210	Right-handed alpha
Helix 19	AC1	D	12	14	Right-handed 310
Helix 20	AC2	D	80	86	Right-handed 310
Helix 21	AC3	D	104	118	Right-handed alpha
Helix 22	AC4	D	149	153	Right-handed 310
Helix 23	AC5	D	173	182	Right-handed alpha
Helix 24	AC6	D	187	210	Right-handed alpha
Helix 25	AC7	E	12	14	Right-handed 310
Helix 26	AC8	E	80	86	Right-handed 310
Helix 27	AC9	E	104	118	Right-handed alpha
Helix 28	AD1	E	149	153	Right-handed 310
Helix 29	AD2	E	173	182	Right-handed alpha
Helix 30	AD3	E	187	209	Right-handed alpha
Helix 31	AD4	F	12	14	Right-handed 310
Helix 32	AD5	F	80	86	Right-handed 310
Helix 33	AD6	F	104	118	Right-handed alpha
Helix 34	AD7	F	149	153	Right-handed 310
Helix 35	AD8	F	173	182	Right-handed alpha
Helix 36	AD9	F	187	210	Right-handed alpha
Helix 37	AE1	G	12	14	Right-handed 310
Helix 38	AE2	G	80	86	Right-handed 310
Helix 39	AE3	G	104	118	Right-handed alpha
Helix 40	AE4	G	149	153	Right-handed 310
Helix 41	AE5	G	173	182	Right-handed alpha
Helix 42	AE6	G	187	210	Right-handed alpha
Helix 43	AE7	H	12	14	Right-handed 310
Helix 44	AE8	H	80	86	Right-handed 310
Helix 45	AE9	H	104	118	Right-handed alpha
Helix 46	AF1	H	149	153	Right-handed 310
Helix 47	AF2	H	173	182	Right-handed alpha
Helix 48	AF3	H	187	210	Right-handed alpha

There are 24 sheets in PDB entry 9DRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-2	-1	first strand
Strand 2	C	167	172	parallel
Strand 3	C	71	78	anti-parallel
Strand 4	C	59	66	anti-parallel
Strand 5	C	95	98	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	93	first strand
Strand 2	C	71	78	anti-parallel
Strand 3	C	59	66	anti-parallel
Strand 4	C	140	147	parallel
Strand 5	C	124	131	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	26	first strand
Strand 2	A	30	38	anti-parallel
Strand 3	A	49	55	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	71	78	anti-parallel
Strand 3	A	59	66	anti-parallel
Strand 4	A	140	147	parallel
Strand 5	A	124	131	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	59	66	anti-parallel
Strand 3	A	71	78	anti-parallel
Strand 4	A	167	172	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	26	first strand
Strand 2	B	30	38	anti-parallel
Strand 3	B	49	55	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	71	78	anti-parallel
Strand 3	B	59	66	anti-parallel
Strand 4	B	140	147	parallel
Strand 5	B	124	131	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	59	66	anti-parallel
Strand 3	B	71	78	anti-parallel
Strand 4	B	166	172	anti-parallel
Strand 5	B	156	157	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	26	first strand
Strand 2	C	30	38	anti-parallel
Strand 3	C	49	55	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	26	first strand
Strand 2	D	30	38	anti-parallel
Strand 3	D	49	55	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	93	first strand
Strand 2	D	71	78	anti-parallel
Strand 3	D	59	66	anti-parallel
Strand 4	D	140	147	parallel
Strand 5	D	124	131	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	59	66	anti-parallel
Strand 3	D	71	78	anti-parallel
Strand 4	D	166	172	anti-parallel
Strand 5	D	156	157	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	26	first strand
Strand 2	E	30	38	anti-parallel
Strand 3	E	49	55	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	93	first strand
Strand 2	E	71	78	anti-parallel
Strand 3	E	59	66	anti-parallel
Strand 4	E	140	147	parallel
Strand 5	E	124	131	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	59	66	anti-parallel
Strand 3	E	71	78	anti-parallel
Strand 4	E	167	172	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	26	first strand
Strand 2	F	30	38	anti-parallel
Strand 3	F	49	55	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	93	first strand
Strand 2	F	71	78	anti-parallel
Strand 3	F	59	66	anti-parallel
Strand 4	F	140	147	parallel
Strand 5	F	124	131	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	98	first strand
Strand 2	F	59	66	anti-parallel
Strand 3	F	71	78	anti-parallel
Strand 4	F	167	172	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	26	first strand
Strand 2	G	30	38	anti-parallel
Strand 3	G	49	55	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	93	first strand
Strand 2	G	71	78	anti-parallel
Strand 3	G	59	66	anti-parallel
Strand 4	G	140	147	parallel
Strand 5	G	124	131	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	98	first strand
Strand 2	G	59	66	anti-parallel
Strand 3	G	71	78	anti-parallel
Strand 4	G	167	172	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	26	first strand
Strand 2	H	30	38	anti-parallel
Strand 3	H	49	55	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	93	first strand
Strand 2	H	71	78	anti-parallel
Strand 3	H	59	66	anti-parallel
Strand 4	H	140	147	parallel
Strand 5	H	124	131	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	98	first strand
Strand 2	H	59	66	anti-parallel
Strand 3	H	71	78	anti-parallel
Strand 4	H	166	172	anti-parallel
Strand 5	H	156	157	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DRD