Analysis of interatomic Contacts of Structural Units in PDB entry:
9DRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DRJ entry

There are 4 chains in PDB entry 9DRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9PRO 345
B
 ARG 5GLY 548
C
 SER -1PRO 157
D
 TYR 21GLY 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9DRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 27Right-handed alpha
Helix 2
AA2
A
27 36Right-handed alpha
Helix 3
AA3
A
45 59Right-handed alpha
Helix 4
AA4
A
90 103Right-handed alpha
Helix 5
AA5
A
119 124Right-handed alpha
Helix 6
AA6
A
135 149Right-handed alpha
Helix 7
AA7
A
215 220Right-handed alpha
Helix 8
AA8
A
226 236Right-handed alpha
Helix 9
AA9
A
238 254Right-handed alpha
Helix 10
AB1
A
258 260Right-handed 310
Helix 11
AB2
A
261 280Right-handed alpha
Helix 12
AB3
A
283 287Right-handed 310
Helix 13
AB4
A
288 294Right-handed 310
Helix 14
AB5
A
299 320Right-handed alpha
Helix 15
AB6
B
8 18Right-handed alpha
Helix 16
AB7
B
26 40Right-handed alpha
Helix 17
AB8
B
53 59Right-handed 310
Helix 18
AB9
B
64 68Right-handed 310
Helix 19
AC1
B
71 84Right-handed alpha
Helix 20
AC2
B
102 107Right-handed alpha
Helix 21
AC3
B
118 133Right-handed alpha
Helix 22
AC4
B
171 177Right-handed alpha
Helix 23
AC5
B
181 198Right-handed alpha
Helix 24
AC6
B
222 230Right-handed alpha
Helix 25
AC7
B
239 248Right-handed alpha
Helix 26
AC8
B
250 260Right-handed alpha
Helix 27
AC9
B
260 269Right-handed alpha
Helix 28
AD1
B
270 274Right-handed 310
Helix 29
AD2
B
283 290Right-handed alpha
Helix 30
AD3
B
307 311Right-handed 310
Helix 31
AD4
B
314 336Right-handed alpha
Helix 32
AD5
B
337 340Right-handed 310
Helix 33
AD6
B
348 366Right-handed alpha
Helix 34
AD7
B
372 381Right-handed alpha
Helix 35
AD8
B
387 407Right-handed alpha
Helix 36
AD9
B
409 412Right-handed 310
Helix 37
AE1
B
456 459Right-handed 310
Helix 38
AE2
B
460 467Right-handed alpha
Helix 39
AE3
B
505 510Right-handed 310
Helix 40
AE4
C
2 19Right-handed alpha
Helix 41
AE5
C
94 98Right-handed 310
Helix 42
AE6
C
108 122Right-handed alpha
Helix 43
AE7
C
132 139Right-handed alpha
Helix 44
AE8
C
140 155Right-handed alpha
Helix 45
AE9
D
44 56Right-handed alpha
Helix 46
AF1
D
76 81Right-handed alpha
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There are 5 sheets in PDB entry 9DRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
62 66parallel
Strand 3
A
38 42parallel
Strand 4
A
128 132parallel
Strand 5
A
152 159parallel
Strand 6
A
162 168anti-parallel
Strand 7
A
328 332anti-parallel
Strand 8
A
337 341anti-parallel
Strand 9
B
427 433anti-parallel
Strand 10
B
414 418anti-parallel
Strand 11
B
145 151anti-parallel
Strand 12
B
136 142anti-parallel
Strand 13
B
111 114parallel
Strand 14
B
19 23parallel
Strand 15
B
43 48parallel
Strand 16
B
88 93parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 177first strand
Strand 2
A
206 212anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 547first strand
Strand 2
B
451 454anti-parallel
Strand 3
B
527 534parallel
Strand 4
B
516 521anti-parallel
Strand 5
B
478 482anti-parallel
Strand 6
B
488 491anti-parallel
Strand 7
C
36 46anti-parallel
Strand 8
C
25 30anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 547first strand
Strand 2
B
451 454anti-parallel
Strand 3
B
527 534parallel
Strand 4
B
516 521anti-parallel
Strand 5
B
478 482anti-parallel
Strand 6
B
488 491anti-parallel
Strand 7
C
36 46anti-parallel
Strand 8
C
57 63anti-parallel
Strand 9
C
74 77anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 38first strand
Strand 2
D
22 27anti-parallel
Strand 3
D
86 92parallel
Strand 4
D
62 66anti-parallel
Strand 5
D
69 70anti-parallel
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