Analysis of interatomic Contacts of Structural Units in PDB entry:
9DRW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DRW entry

There are 4 chains in PDB entry 9DRW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 242	LYS 503
B	ASP 242	SER 502
C	GLY 244	SER 502
D	GLY 244	SER 502

There are 10 helices in PDB entry 9DRW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	262	266	Right-handed 310
Helix 2	AA2	A	303	310	Right-handed alpha
Helix 3	AA3	A	424	426	Right-handed 310
Helix 4	AA4	B	262	266	Right-handed 310
Helix 5	AA5	B	303	310	Right-handed alpha
Helix 6	AA6	B	424	426	Right-handed 310
Helix 7	AA7	C	262	266	Right-handed 310
Helix 8	AA8	C	303	310	Right-handed alpha
Helix 9	AA9	D	262	266	Right-handed 310
Helix 10	AB1	D	303	310	Right-handed alpha

There are 24 sheets in PDB entry 9DRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	251	first strand
Strand 2	A	493	502	anti-parallel
Strand 3	A	255	259	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	251	first strand
Strand 2	A	493	502	anti-parallel
Strand 3	A	485	490	anti-parallel
Strand 4	A	476	480	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand
Strand 2	A	285	289	anti-parallel
Strand 3	A	295	301	anti-parallel
Strand 4	A	314	322	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	333	337	anti-parallel
Strand 3	A	343	348	anti-parallel
Strand 4	A	353	359	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	384	first strand
Strand 2	A	387	392	anti-parallel
Strand 3	A	400	406	anti-parallel
Strand 4	A	413	422	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	432	first strand
Strand 2	A	435	439	anti-parallel
Strand 3	A	448	454	anti-parallel
Strand 4	A	460	466	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	493	501	anti-parallel
Strand 3	B	255	259	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	493	501	anti-parallel
Strand 3	B	485	490	anti-parallel
Strand 4	B	476	480	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	272	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	295	301	anti-parallel
Strand 4	B	314	322	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	333	337	anti-parallel
Strand 3	B	343	348	anti-parallel
Strand 4	B	353	359	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	384	first strand
Strand 2	B	387	392	anti-parallel
Strand 3	B	400	406	anti-parallel
Strand 4	B	413	422	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	432	first strand
Strand 2	B	435	439	anti-parallel
Strand 3	B	448	454	anti-parallel
Strand 4	B	460	466	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	493	501	anti-parallel
Strand 3	C	255	259	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	493	501	anti-parallel
Strand 3	C	485	490	anti-parallel
Strand 4	C	474	480	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	271	first strand
Strand 2	C	285	289	anti-parallel
Strand 3	C	295	301	anti-parallel
Strand 4	C	314	322	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	333	337	anti-parallel
Strand 3	C	343	348	anti-parallel
Strand 4	C	354	359	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	384	first strand
Strand 2	C	387	392	anti-parallel
Strand 3	C	400	406	anti-parallel
Strand 4	C	413	422	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	432	first strand
Strand 2	C	435	440	anti-parallel
Strand 3	C	446	454	anti-parallel
Strand 4	C	460	468	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	493	501	anti-parallel
Strand 3	D	255	259	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	493	501	anti-parallel
Strand 3	D	485	490	anti-parallel
Strand 4	D	474	480	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	271	first strand
Strand 2	D	285	289	anti-parallel
Strand 3	D	295	301	anti-parallel
Strand 4	D	314	322	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	330	first strand
Strand 2	D	333	337	anti-parallel
Strand 3	D	343	348	anti-parallel
Strand 4	D	354	359	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	384	first strand
Strand 2	D	387	392	anti-parallel
Strand 3	D	400	406	anti-parallel
Strand 4	D	413	422	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	432	first strand
Strand 2	D	435	440	anti-parallel
Strand 3	D	446	454	anti-parallel
Strand 4	D	460	468	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DRW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DRW