Analysis of interatomic Contacts of Structural Units in PDB entry:
9DRY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DRY entry

There are 6 chains in PDB entry 9DRY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 226	VAL 300
E	GLN 1	LYS 222
F	PRO 2	SER 216
B	ASP 226	VAL 300
G	GLN 1	LYS 222
H	PRO 2	SER 216

There are 22 helices in PDB entry 9DRY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	228	232	Right-handed 310
Helix 2	AA2	A	254	264	Right-handed alpha
Helix 3	AA3	A	283	295	Right-handed alpha
Helix 4	AA4	E	65	70	Right-handed 310
Helix 5	AA5	E	86	90	Right-handed 310
Helix 6	AA6	E	136	141	Right-handed alpha
Helix 7	AA7	E	164	166	Right-handed 310
Helix 8	AA8	E	193	197	Right-handed 310
Helix 9	AA9	F	80	84	Right-handed 310
Helix 10	AB1	F	125	131	Right-handed alpha
Helix 11	AB2	F	185	191	Right-handed alpha
Helix 12	AB3	B	228	232	Right-handed 310
Helix 13	AB4	B	254	264	Right-handed alpha
Helix 14	AB5	B	283	295	Right-handed alpha
Helix 15	AB6	G	65	70	Right-handed 310
Helix 16	AB7	G	86	90	Right-handed 310
Helix 17	AB8	G	136	141	Right-handed alpha
Helix 18	AB9	G	164	166	Right-handed 310
Helix 19	AC1	G	193	197	Right-handed 310
Helix 20	AC2	H	80	84	Right-handed 310
Helix 21	AC3	H	125	131	Right-handed alpha
Helix 22	AC4	H	185	191	Right-handed alpha

There are 26 sheets in PDB entry 9DRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	243	245	anti-parallel
Strand 3	A	281	282	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	22	25	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	91	97	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	48	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	80	82	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	74	first strand
Strand 2	E	77	78	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	144	153	anti-parallel
Strand 3	E	184	192	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	144	153	anti-parallel
Strand 3	E	184	192	anti-parallel
Strand 4	E	177	178	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	202	208	anti-parallel
Strand 3	E	213	219	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	105	110	parallel
Strand 3	F	85	89	anti-parallel
Strand 4	F	36	39	anti-parallel
Strand 5	F	46	49	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	22	first strand
Strand 2	F	72	76	anti-parallel
Strand 3	F	63	66	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	122	first strand
Strand 2	F	134	143	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	163	165	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	122	first strand
Strand 2	F	134	143	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	169	170	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	159	first strand
Strand 2	F	149	154	anti-parallel
Strand 3	F	195	201	anti-parallel
Strand 4	F	204	210	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	243	245	anti-parallel
Strand 3	B	281	282	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	22	25	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	115	119	parallel
Strand 3	G	91	97	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	48	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	20	first strand
Strand 2	G	80	82	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	74	first strand
Strand 2	G	77	78	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	132	first strand
Strand 2	G	144	153	anti-parallel
Strand 3	G	184	192	anti-parallel
Strand 4	G	171	173	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	132	first strand
Strand 2	G	144	153	anti-parallel
Strand 3	G	184	192	anti-parallel
Strand 4	G	177	178	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	162	first strand
Strand 2	G	202	208	anti-parallel
Strand 3	G	213	219	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	13	first strand
Strand 2	H	105	110	parallel
Strand 3	H	85	89	anti-parallel
Strand 4	H	36	39	anti-parallel
Strand 5	H	46	49	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	22	first strand
Strand 2	H	72	76	anti-parallel
Strand 3	H	63	66	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	134	143	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	134	143	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	159	first strand
Strand 2	H	149	154	anti-parallel
Strand 3	H	195	201	anti-parallel
Strand 4	H	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DRY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DRY