Analysis of interatomic Contacts of Structural Units in PDB entry:
9DRZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DRZ entry

There are 3 chains in PDB entry 9DRZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 163
B
 SER 2LEU 163
C
 ASN 3LEU 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9DRZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
35 39Right-handed alpha
Helix 3
AA3
A
40 54Right-handed alpha
Helix 4
AA4
A
66 80Right-handed alpha
Helix 5
AA5
A
92 102Right-handed alpha
Helix 6
AA6
A
115 124Right-handed alpha
Helix 7
AA7
A
152 161Right-handed alpha
Helix 8
AA8
B
15 27Right-handed alpha
Helix 9
AA9
B
35 39Right-handed alpha
Helix 10
AB1
B
40 54Right-handed alpha
Helix 11
AB2
B
66 80Right-handed alpha
Helix 12
AB3
B
92 104Right-handed alpha
Helix 13
AB4
B
114 125Right-handed alpha
Helix 14
AB5
B
152 161Right-handed alpha
Helix 15
AB6
C
15 27Right-handed alpha
Helix 16
AB7
C
35 39Right-handed alpha
Helix 17
AB8
C
40 53Right-handed alpha
Helix 18
AB9
C
66 80Right-handed alpha
Helix 19
AC1
C
92 103Right-handed alpha
Helix 20
AC2
C
114 125Right-handed alpha
Helix 21
AC3
C
152 161Right-handed alpha
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There are 5 sheets in PDB entry 9DRZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
57 61parallel
Strand 3
A
5 9parallel
Strand 4
A
84 89parallel
Strand 5
A
140 143parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
57 61parallel
Strand 3
B
5 9parallel
Strand 4
B
84 89parallel
Strand 5
B
140 143parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
112 113anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 34first strand
Strand 2
C
57 61parallel
Strand 3
C
5 9parallel
Strand 4
C
84 89parallel
Strand 5
C
139 143parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 109first strand
Strand 2
C
112 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il