Analysis of interatomic Contacts of Structural Units in PDB entry:
9DS2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DS2 entry

There are 12 chains in PDB entry 9DS2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 8	GLN 327
D	GLY 1	SER 175
A	ASP 8	GLN 327
B	GLY 1	SER 175
E	ASP 8	SER 325
F	GLY 1	SER 175
G	GLN 1	CYS 227
I	GLU 1	GLU 214
H	GLN 1	CYS 227
J	GLU 1	GLU 214
K	GLN 1	CYS 227
L	GLU 1	GLU 214

There are 43 helices in PDB entry 9DS2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	53	56	Right-handed 310
Helix 2	AA2	C	65	72	Right-handed alpha
Helix 3	AA3	C	104	112	Right-handed alpha
Helix 4	AA4	C	187	196	Right-handed alpha
Helix 5	AA5	D	37	58	Right-handed alpha
Helix 6	AA6	D	74	127	Right-handed alpha
Helix 7	AA7	D	145	154	Right-handed alpha
Helix 8	AA8	D	158	174	Right-handed alpha
Helix 9	AA9	A	53	56	Right-handed 310
Helix 10	AB1	A	65	72	Right-handed alpha
Helix 11	AB2	A	104	113	Right-handed alpha
Helix 12	AB3	A	187	196	Right-handed alpha
Helix 13	AB4	B	39	58	Right-handed alpha
Helix 14	AB5	B	74	127	Right-handed alpha
Helix 15	AB6	B	145	154	Right-handed alpha
Helix 16	AB7	B	158	175	Right-handed alpha
Helix 17	AB8	E	65	72	Right-handed alpha
Helix 18	AB9	E	104	112	Right-handed alpha
Helix 19	AC1	E	122	126	Right-handed 310
Helix 20	AC2	E	187	196	Right-handed alpha
Helix 21	AC3	F	37	57	Right-handed alpha
Helix 22	AC4	F	74	127	Right-handed alpha
Helix 23	AC5	F	145	154	Right-handed alpha
Helix 24	AC6	F	158	174	Right-handed alpha
Helix 25	AC7	G	87	91	Right-handed 310
Helix 26	AC8	G	104	108	Right-handed 310
Helix 27	AC9	G	138	142	Right-handed 310
Helix 28	AD1	G	211	215	Right-handed 310
Helix 29	AD2	I	79	83	Right-handed 310
Helix 30	AD3	I	122	127	Right-handed alpha
Helix 31	AD4	I	184	188	Right-handed alpha
Helix 32	AD5	H	87	91	Right-handed 310
Helix 33	AD6	H	104	108	Right-handed 310
Helix 34	AD7	H	198	201	Right-handed 310
Helix 35	AD8	J	79	83	Right-handed 310
Helix 36	AD9	J	124	129	Right-handed alpha
Helix 37	AE1	J	184	188	Right-handed alpha
Helix 38	AE2	K	87	91	Right-handed 310
Helix 39	AE3	K	104	108	Right-handed 310
Helix 40	AE4	K	198	201	Right-handed 310
Helix 41	AE5	L	79	83	Right-handed 310
Helix 42	AE6	L	122	127	Right-handed alpha
Helix 43	AE7	L	184	188	Right-handed alpha

There are 58 sheets in PDB entry 9DS2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	C	12	17	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	134	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	34	35	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	315	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	294	295	parallel
Strand 3	C	307	308	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	87	89	parallel
Strand 3	C	267	269	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	118	first strand
Strand 2	C	257	262	anti-parallel
Strand 3	C	175	184	anti-parallel
Strand 4	C	251	254	anti-parallel
Strand 5	C	151	153	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	118	first strand
Strand 2	C	257	262	anti-parallel
Strand 3	C	175	184	anti-parallel
Strand 4	C	229	237	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	141	first strand
Strand 2	C	144	146	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	169	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	210	213	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	281	282	anti-parallel
Strand 3	C	302	303	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	22	27	anti-parallel
Strand 3	A	12	17	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	134	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	34	35	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	294	295	parallel
Strand 3	A	307	308	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	87	89	parallel
Strand 3	A	267	269	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	256	262	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	251	254	anti-parallel
Strand 5	A	151	153	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	256	262	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	229	237	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	155	156	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	141	first strand
Strand 2	A	144	146	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	287	288	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	36	first strand
Strand 2	F	22	27	anti-parallel
Strand 3	E	12	17	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	134	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	315	317	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	294	295	parallel
Strand 3	E	307	308	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	274	279	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	87	89	parallel
Strand 3	E	267	269	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	118	first strand
Strand 2	E	257	262	anti-parallel
Strand 3	E	175	184	anti-parallel
Strand 4	E	251	254	anti-parallel
Strand 5	E	151	153	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	118	first strand
Strand 2	E	257	262	anti-parallel
Strand 3	E	175	184	anti-parallel
Strand 4	E	229	237	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	155	156	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	141	first strand
Strand 2	E	144	146	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	169	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	202	205	anti-parallel
Strand 4	E	210	213	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	282	first strand
Strand 2	E	302	303	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	118	122	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	135	first strand
Strand 2	G	146	156	anti-parallel
Strand 3	G	187	196	anti-parallel
Strand 4	G	180	181	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	165	first strand
Strand 2	G	206	210	anti-parallel
Strand 3	G	219	221	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	103	107	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	44	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	115	119	first strand
Strand 2	I	130	140	anti-parallel
Strand 3	I	174	183	anti-parallel
Strand 4	I	160	164	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	145	151	first strand
Strand 2	I	192	199	anti-parallel
Strand 3	I	206	207	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	145	151	first strand
Strand 2	I	192	199	anti-parallel
Strand 3	I	210	211	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	70	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	44	51	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	92	98	anti-parallel
Strand 5	H	118	120	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	187	196	anti-parallel
Strand 4	H	180	181	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	165	first strand
Strand 2	H	206	211	anti-parallel
Strand 3	H	216	221	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	62	67	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	103	107	parallel
Strand 3	J	85	90	anti-parallel
Strand 4	J	33	38	anti-parallel
Strand 5	J	45	49	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	117	119	first strand
Strand 2	J	130	140	anti-parallel
Strand 3	J	174	183	anti-parallel
Strand 4	J	160	164	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	154	156	first strand
Strand 2	J	146	151	anti-parallel
Strand 3	J	192	198	anti-parallel
Strand 4	J	206	211	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	70	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	118	122	parallel
Strand 3	K	92	98	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	131	135	first strand
Strand 2	K	146	156	anti-parallel
Strand 3	K	187	196	anti-parallel
Strand 4	K	174	176	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	131	135	first strand
Strand 2	K	146	156	anti-parallel
Strand 3	K	187	196	anti-parallel
Strand 4	K	180	181	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	162	165	first strand
Strand 2	K	206	210	anti-parallel
Strand 3	K	219	221	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	165	anti-parallel

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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DS2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DS2