Analysis of interatomic Contacts of Structural Units in PDB entry:
9DSO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DSO entry

There are 3 chains in PDB entry 9DSO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3VAL 935
B
 GLY 2LEU 386
C
 ASP 255ASP 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9DSO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 14Right-handed alpha
Helix 2
AA2
A
54 63Right-handed alpha
Helix 3
AA3
A
72 92Right-handed alpha
Helix 4
AA4
A
106 138Right-handed alpha
Helix 5
AA5
A
156 160Right-handed 310
Helix 6
AA6
A
164 185Right-handed alpha
Helix 7
AA7
A
186 189Right-handed 310
Helix 8
AA8
A
203 217Right-handed alpha
Helix 9
AA9
A
235 243Right-handed alpha
Helix 10
AB1
A
254 262Right-handed alpha
Helix 11
AB2
A
278 286Right-handed alpha
Helix 12
AB3
A
294 305Right-handed alpha
Helix 13
AB4
A
315 331Right-handed alpha
Helix 14
AB5
A
347 359Right-handed alpha
Helix 15
AB6
A
360 362Right-handed 310
Helix 16
AB7
A
373 387Right-handed alpha
Helix 17
AB8
A
387 410Right-handed alpha
Helix 18
AB9
A
593 598Right-handed alpha
Helix 19
AC1
A
603 614Right-handed alpha
Helix 20
AC2
A
616 618Right-handed 310
Helix 21
AC3
A
619 644Right-handed alpha
Helix 22
AC4
A
660 664Right-handed 310
Helix 23
AC5
A
681 688Right-handed alpha
Helix 24
AC6
A
694 698Right-handed 310
Helix 25
AC7
A
703 708Right-handed alpha
Helix 26
AC8
A
713 717Right-handed 310
Helix 27
AC9
A
742 754Right-handed alpha
Helix 28
AD1
A
755 757Right-handed 310
Helix 29
AD2
A
758 765Right-handed alpha
Helix 30
AD3
A
780 789Right-handed alpha
Helix 31
AD4
A
791 796Right-handed 310
Helix 32
AD5
A
873 882Right-handed alpha
Helix 33
AD6
A
894 901Right-handed alpha
Helix 34
AD7
A
920 935Right-handed alpha
Helix 35
AD8
B
49 55Right-handed 310
Helix 36
AD9
B
70 73Right-handed 310
Helix 37
AE1
B
79 94Right-handed alpha
Helix 38
AE2
B
105 114Right-handed alpha
Helix 39
AE3
B
159 175Right-handed alpha
Helix 40
AE4
B
180 184Right-handed 310
Helix 41
AE5
B
185 192Right-handed alpha
Helix 42
AE6
B
193 195Right-handed 310
Helix 43
AE7
B
235 237Right-handed 310
Helix 44
AE8
B
250 272Right-handed alpha
Helix 45
AE9
B
297 306Right-handed alpha
Helix 46
AF1
B
306 311Right-handed alpha
Helix 47
AF2
B
311 331Right-handed alpha
Helix 48
AF3
B
364 370Right-handed alpha
Helix 49
AF4
B
376 386Right-handed alpha
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There are 8 sheets in PDB entry 9DSO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
289 293anti-parallel
Strand 3
A
248 253anti-parallel
Strand 4
A
227 230parallel
Strand 5
A
47 53parallel
Strand 6
A
93 100parallel
Strand 7
A
192 196parallel
Strand 8
A
771 775anti-parallel
Strand 9
A
843 849anti-parallel
Strand 10
A
811 815anti-parallel
Strand 11
A
799 802anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
32 33anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 591first strand
Strand 2
A
723 724parallel
Strand 3
A
735 736anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 826first strand
Strand 2
A
838 839anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
352 357anti-parallel
Strand 3
B
342 349anti-parallel
Strand 4
B
125 131anti-parallel
Strand 5
B
134 139anti-parallel
Strand 6
B
101 104parallel
Strand 7
B
214 222parallel
Strand 8
B
202 211anti-parallel
Strand 9
B
17 29anti-parallel
Strand 10
B
35 37anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
352 357anti-parallel
Strand 3
B
342 349anti-parallel
Strand 4
B
125 131anti-parallel
Strand 5
B
134 139anti-parallel
Strand 6
B
101 104parallel
Strand 7
B
214 222parallel
Strand 8
B
202 211anti-parallel
Strand 9
B
17 29anti-parallel
Strand 10
C
262 264parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
44 46anti-parallel
Strand 3
B
224 225parallel
Strand 4
B
239 246anti-parallel
Strand 5
B
275 281parallel
Strand 6
B
287 294anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
198 199parallel
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