Analysis of interatomic Contacts of Structural Units in PDB entry:
9DTL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DTL entry

There is 1 chain in PDB entry 9DTL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 25ARG 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9DTL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 56Right-handed alpha
Helix 2
AA2
A
75 83Right-handed alpha
Helix 3
AA3
A
91 95Right-handed 310
Helix 4
AA4
A
102 107Right-handed 310
Helix 5
AA5
A
113 123Right-handed alpha
Helix 6
AA6
A
123 129Right-handed alpha
Helix 7
AA7
A
130 132Right-handed 310
Helix 8
AA8
A
133 136Right-handed 310
Helix 9
AA9
A
159 164Right-handed 310
Helix 10
AB1
A
173 183Right-handed alpha
Helix 11
AB2
A
191 193Right-handed 310
Helix 12
AB3
A
194 202Right-handed alpha
Helix 13
AB4
A
210 217Right-handed alpha
Helix 14
AB5
A
218 223Right-handed 310
Helix 15
AB6
A
242 248Right-handed alpha
Helix 16
AB7
A
249 286Right-handed alpha
Helix 17
AB8
A
294 306Right-handed alpha
Helix 18
AB9
A
307 312Right-handed 310
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There are 3 sheets in PDB entry 9DTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
60 65parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
225 241anti-parallel
Strand 3
A
138 153anti-parallel
Strand 4
A
206 209anti-parallel
Strand 5
A
167 170parallel
Strand 6
A
186 189parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
225 241anti-parallel
Strand 3
A
289 291parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il