Analysis of interatomic Contacts of Structural Units in PDB entry:
9DTQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DTQ entry

There are 4 chains in PDB entry 9DTQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 9	PRO 375
B	SER 26	ALA 536
D	MET 1	THR 135
E	PRO 23	ALA 536

There are 56 helices in PDB entry 9DTQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	23	Right-handed 310
Helix 2	AA2	A	34	46	Right-handed alpha
Helix 3	AA3	A	48	52	Right-handed 310
Helix 4	AA4	A	61	66	Right-handed alpha
Helix 5	AA5	A	70	80	Right-handed alpha
Helix 6	AA6	A	81	85	Right-handed 310
Helix 7	AA7	A	88	96	Right-handed alpha
Helix 8	AA8	A	106	127	Right-handed alpha
Helix 9	AA9	A	155	165	Right-handed alpha
Helix 10	AB1	A	181	188	Right-handed alpha
Helix 11	AB2	A	217	221	Right-handed 310
Helix 12	AB3	A	234	254	Right-handed alpha
Helix 13	AB4	A	263	267	Right-handed 310
Helix 14	AB5	A	278	290	Right-handed alpha
Helix 15	AB6	A	291	293	Right-handed 310
Helix 16	AB7	A	305	321	Right-handed alpha
Helix 17	AB8	A	334	339	Right-handed 310
Helix 18	AB9	A	356	372	Right-handed alpha
Helix 19	AC1	B	41	56	Right-handed alpha
Helix 20	AC2	B	75	83	Right-handed alpha
Helix 21	AC3	B	83	92	Right-handed alpha
Helix 22	AC4	B	108	122	Right-handed alpha
Helix 23	AC5	B	130	142	Right-handed alpha
Helix 24	AC6	B	143	157	Right-handed alpha
Helix 25	AC7	B	162	173	Right-handed alpha
Helix 26	AC8	B	175	189	Right-handed alpha
Helix 27	AC9	B	189	194	Right-handed alpha
Helix 28	AD1	B	196	201	Right-handed alpha
Helix 29	AD2	B	203	213	Right-handed alpha
Helix 30	AD3	B	220	232	Right-handed alpha
Helix 31	AD4	B	236	238	Right-handed 310
Helix 32	AD5	B	239	246	Right-handed alpha
Helix 33	AD6	B	475	479	Right-handed 310
Helix 34	AD7	D	41	57	Right-handed alpha
Helix 35	AD8	D	59	70	Right-handed alpha
Helix 36	AD9	D	74	79	Right-handed alpha
Helix 37	AE1	D	80	84	Right-handed 310
Helix 38	AE2	D	92	107	Right-handed alpha
Helix 39	AE3	D	109	117	Right-handed alpha
Helix 40	AE4	D	121	128	Right-handed alpha
Helix 41	AE5	E	41	56	Right-handed alpha
Helix 42	AE6	E	75	83	Right-handed alpha
Helix 43	AE7	E	83	92	Right-handed alpha
Helix 44	AE8	E	108	122	Right-handed alpha
Helix 45	AE9	E	130	141	Right-handed alpha
Helix 46	AF1	E	143	157	Right-handed alpha
Helix 47	AF2	E	159	161	Right-handed 310
Helix 48	AF3	E	162	173	Right-handed alpha
Helix 49	AF4	E	175	189	Right-handed alpha
Helix 50	AF5	E	189	195	Right-handed alpha
Helix 51	AF6	E	196	201	Right-handed alpha
Helix 52	AF7	E	203	213	Right-handed alpha
Helix 53	AF8	E	220	232	Right-handed alpha
Helix 54	AF9	E	232	237	Right-handed alpha
Helix 55	AG1	E	239	247	Right-handed alpha
Helix 56	AG2	E	408	410	Right-handed 310

There are 23 sheets in PDB entry 9DTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	229	first strand
Strand 2	A	194	201	parallel
Strand 3	A	171	175	parallel
Strand 4	A	257	261	parallel
Strand 5	A	296	299	parallel
Strand 6	A	132	135	parallel
Strand 7	A	12	15	parallel
Strand 8	A	53	56	parallel
Strand 9	D	31	34	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	E	123	127	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	74	first strand
Strand 2	B	63	67	anti-parallel
Strand 3	B	102	104	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	E	34	38	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	249	250	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	257	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	281	287	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	262	first strand
Strand 2	B	528	531	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	297	first strand
Strand 2	B	303	308	anti-parallel
Strand 3	B	315	319	anti-parallel
Strand 4	B	327	328	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	344	first strand
Strand 2	B	349	356	anti-parallel
Strand 3	B	362	370	anti-parallel
Strand 4	B	375	378	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	393	first strand
Strand 2	B	397	401	anti-parallel
Strand 3	B	417	422	anti-parallel
Strand 4	B	427	434	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	412	414	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	446	first strand
Strand 2	B	449	454	anti-parallel
Strand 3	B	458	463	anti-parallel
Strand 4	B	468	473	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	490	first strand
Strand 2	B	493	498	anti-parallel
Strand 3	B	508	512	anti-parallel
Strand 4	B	517	521	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	74	first strand
Strand 2	E	63	67	anti-parallel
Strand 3	E	101	103	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	216	first strand
Strand 2	E	249	250	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	289	first strand
Strand 2	E	268	275	anti-parallel
Strand 3	E	255	261	anti-parallel
Strand 4	E	530	535	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	299	first strand
Strand 2	E	302	309	anti-parallel
Strand 3	E	312	316	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	337	first strand
Strand 2	E	356	357	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	344	first strand
Strand 2	E	349	353	anti-parallel
Strand 3	E	366	370	anti-parallel
Strand 4	E	375	379	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	386	387	first strand
Strand 2	E	404	407	anti-parallel
Strand 3	E	411	414	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	393	first strand
Strand 2	E	397	401	anti-parallel
Strand 3	E	418	422	anti-parallel
Strand 4	E	427	430	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	442	445	first strand
Strand 2	E	450	453	anti-parallel
Strand 3	E	458	463	anti-parallel
Strand 4	E	468	473	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	485	490	first strand
Strand 2	E	493	498	anti-parallel
Strand 3	E	508	512	anti-parallel
Strand 4	E	517	520	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DTQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DTQ