Analysis of interatomic Contacts of Structural Units in PDB entry:
9DTT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DTT entry

There are 2 chains in PDB entry 9DTT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9MET 886
B
 U 4 G 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9DTT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed alpha
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
38 48Right-handed alpha
Helix 4
AA4
A
57 68Right-handed alpha
Helix 5
AA5
A
85 93Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
153 169Right-handed alpha
Helix 8
AA8
A
187 199Right-handed alpha
Helix 9
AA9
A
228 242Right-handed alpha
Helix 10
AB1
A
273 289Right-handed alpha
Helix 11
AB2
A
322 328Right-handed alpha
Helix 12
AB3
A
329 333Right-handed 310
Helix 13
AB4
A
335 343Right-handed alpha
Helix 14
AB5
A
349 358Right-handed alpha
Helix 15
AB6
A
367 386Right-handed alpha
Helix 16
AB7
A
395 402Right-handed alpha
Helix 17
AB8
A
421 429Right-handed alpha
Helix 18
AB9
A
429 442Right-handed alpha
Helix 19
AC1
A
443 445Right-handed 310
Helix 20
AC2
A
478 490Right-handed alpha
Helix 21
AC3
A
491 496Right-handed alpha
Helix 22
AC4
A
511 525Right-handed alpha
Helix 23
AC5
A
543 548Right-handed alpha
Helix 24
AC6
A
549 556Right-handed 310
Helix 25
AC7
A
558 572Right-handed alpha
Helix 26
AC8
A
605 627Right-handed alpha
Helix 27
AC9
A
636 657Right-handed alpha
Helix 28
AD1
A
678 684Right-handed alpha
Helix 29
AD2
A
702 706Right-handed 310
Helix 30
AD3
A
730 739Right-handed alpha
Helix 31
AD4
A
748 766Right-handed alpha
Helix 32
AD5
A
770 783Right-handed alpha
Helix 33
AD6
A
801 805Right-handed 310
Helix 34
AD7
A
808 818Right-handed alpha
Helix 35
AD8
A
840 847Right-handed alpha
Helix 36
AD9
A
853 862Right-handed alpha
Helix 37
AE1
A
862 875Right-handed alpha
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There are 7 sheets in PDB entry 9DTT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
251 253parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
97 103parallel
Strand 3
A
75 80parallel
Strand 4
A
142 145parallel
Strand 5
A
177 182parallel
Strand 6
A
218 221anti-parallel
Strand 7
A
204 206anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 311first strand
Strand 2
A
587 595anti-parallel
Strand 3
A
576 584anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
740 741anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 661first strand
Strand 2
A
664 667anti-parallel
Strand 3
A
530 533anti-parallel
Strand 4
A
699 700anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 536first strand
Strand 2
A
687 688anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 717first strand
Strand 2
A
723 728anti-parallel
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