Analysis of interatomic Contacts of Structural Units in PDB entry:
9DU5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DU5 entry

There are 4 chains in PDB entry 9DU5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LEU 454
B	LYS 3	LEU 454
C	LYS 3	ALA 453
D	LYS 3	ALA 453

There are 67 helices in PDB entry 9DU5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	36	Right-handed alpha
Helix 2	AA2	A	53	68	Right-handed alpha
Helix 3	AA3	A	79	90	Right-handed alpha
Helix 4	AA4	A	121	135	Right-handed alpha
Helix 5	AA5	A	153	163	Right-handed alpha
Helix 6	AA6	A	166	174	Right-handed alpha
Helix 7	AA7	A	184	188	Right-handed 310
Helix 8	AA8	A	189	198	Right-handed alpha
Helix 9	AA9	A	224	235	Right-handed alpha
Helix 10	AB1	A	260	277	Right-handed alpha
Helix 11	AB2	A	289	298	Right-handed alpha
Helix 12	AB3	A	308	320	Right-handed alpha
Helix 13	AB4	A	341	357	Right-handed alpha
Helix 14	AB5	A	359	366	Right-handed alpha
Helix 15	AB6	A	382	397	Right-handed alpha
Helix 16	AB7	A	435	454	Right-handed alpha
Helix 17	AB8	B	19	37	Right-handed alpha
Helix 18	AB9	B	53	68	Right-handed alpha
Helix 19	AC1	B	79	90	Right-handed alpha
Helix 20	AC2	B	121	135	Right-handed alpha
Helix 21	AC3	B	141	145	Right-handed 310
Helix 22	AC4	B	153	163	Right-handed alpha
Helix 23	AC5	B	166	174	Right-handed alpha
Helix 24	AC6	B	184	188	Right-handed 310
Helix 25	AC7	B	189	198	Right-handed alpha
Helix 26	AC8	B	224	235	Right-handed alpha
Helix 27	AC9	B	260	277	Right-handed alpha
Helix 28	AD1	B	289	298	Right-handed alpha
Helix 29	AD2	B	308	320	Right-handed alpha
Helix 30	AD3	B	341	357	Right-handed alpha
Helix 31	AD4	B	359	366	Right-handed alpha
Helix 32	AD5	B	382	397	Right-handed alpha
Helix 33	AD6	B	435	454	Right-handed alpha
Helix 34	AD7	C	19	36	Right-handed alpha
Helix 35	AD8	C	53	68	Right-handed alpha
Helix 36	AD9	C	79	90	Right-handed alpha
Helix 37	AE1	C	121	135	Right-handed alpha
Helix 38	AE2	C	141	145	Right-handed 310
Helix 39	AE3	C	153	163	Right-handed alpha
Helix 40	AE4	C	166	174	Right-handed alpha
Helix 41	AE5	C	184	188	Right-handed 310
Helix 42	AE6	C	189	198	Right-handed alpha
Helix 43	AE7	C	224	235	Right-handed alpha
Helix 44	AE8	C	260	277	Right-handed alpha
Helix 45	AE9	C	289	298	Right-handed alpha
Helix 46	AF1	C	308	319	Right-handed alpha
Helix 47	AF2	C	341	357	Right-handed alpha
Helix 48	AF3	C	359	366	Right-handed alpha
Helix 49	AF4	C	382	397	Right-handed alpha
Helix 50	AF5	C	435	453	Right-handed alpha
Helix 51	AF6	D	19	36	Right-handed alpha
Helix 52	AF7	D	53	68	Right-handed alpha
Helix 53	AF8	D	79	90	Right-handed alpha
Helix 54	AF9	D	121	135	Right-handed alpha
Helix 55	AG1	D	141	145	Right-handed 310
Helix 56	AG2	D	153	163	Right-handed alpha
Helix 57	AG3	D	166	174	Right-handed alpha
Helix 58	AG4	D	184	188	Right-handed 310
Helix 59	AG5	D	189	198	Right-handed alpha
Helix 60	AG6	D	224	235	Right-handed alpha
Helix 61	AG7	D	260	277	Right-handed alpha
Helix 62	AG8	D	289	298	Right-handed alpha
Helix 63	AG9	D	308	319	Right-handed alpha
Helix 64	AH1	D	341	357	Right-handed alpha
Helix 65	AH2	D	359	366	Right-handed alpha
Helix 66	AH3	D	382	397	Right-handed alpha
Helix 67	AH4	D	435	453	Right-handed alpha

There are 20 sheets in PDB entry 9DU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	94	98	anti-parallel
Strand 4	A	43	48	parallel
Strand 5	A	71	77	parallel
Strand 6	A	148	150	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	204	first strand
Strand 2	A	176	180	parallel
Strand 3	A	238	242	parallel
Strand 4	A	249	252	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	305	first strand
Strand 2	A	279	284	parallel
Strand 3	A	323	324	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	337	340	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	377	first strand
Strand 2	A	427	433	anti-parallel
Strand 3	A	415	420	anti-parallel
Strand 4	A	407	410	anti-parallel
Strand 5	A	401	402	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	107	113	anti-parallel
Strand 3	B	94	98	anti-parallel
Strand 4	B	43	48	parallel
Strand 5	B	71	77	parallel
Strand 6	B	148	150	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	204	first strand
Strand 2	B	176	180	parallel
Strand 3	B	238	242	parallel
Strand 4	B	249	252	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	305	first strand
Strand 2	B	280	284	parallel
Strand 3	B	323	324	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	337	340	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	377	first strand
Strand 2	B	427	433	anti-parallel
Strand 3	B	415	420	anti-parallel
Strand 4	B	407	410	anti-parallel
Strand 5	B	400	402	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	107	113	anti-parallel
Strand 3	C	94	98	anti-parallel
Strand 4	C	43	48	parallel
Strand 5	C	71	77	parallel
Strand 6	C	148	150	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	204	first strand
Strand 2	C	176	180	parallel
Strand 3	C	238	242	parallel
Strand 4	C	249	252	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	305	first strand
Strand 2	C	279	284	parallel
Strand 3	C	323	324	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	337	340	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	377	first strand
Strand 2	C	426	433	anti-parallel
Strand 3	C	415	421	anti-parallel
Strand 4	C	407	410	anti-parallel
Strand 5	C	401	402	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	113	anti-parallel
Strand 3	D	94	98	anti-parallel
Strand 4	D	43	48	parallel
Strand 5	D	71	77	parallel
Strand 6	D	148	150	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	204	first strand
Strand 2	D	176	180	parallel
Strand 3	D	238	242	parallel
Strand 4	D	249	252	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	305	first strand
Strand 2	D	280	284	parallel
Strand 3	D	323	324	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	333	first strand
Strand 2	D	337	340	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	378	first strand
Strand 2	D	426	433	anti-parallel
Strand 3	D	414	421	anti-parallel
Strand 4	D	407	410	anti-parallel
Strand 5	D	401	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DU5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DU5